Atex007493.1
Basic Information
- Insect
- Atta texana
- Gene Symbol
- -
- Assembly
- GCA_004480015.1
- Location
- QEPB01020082.1:9389-14883[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.025 3.1 8.9 0.1 1 20 54 73 54 75 0.95 2 19 4e-05 0.005 17.7 0.4 1 21 93 113 93 114 0.95 3 19 0.00088 0.11 13.5 4.3 2 23 170 191 169 191 0.95 4 19 0.00039 0.049 14.6 1.5 1 23 195 217 195 217 0.97 5 19 0.0012 0.15 13.1 0.4 3 23 225 245 224 245 0.97 6 19 4.1e-07 5.1e-05 24.0 4.5 2 23 252 273 251 273 0.96 7 19 4.1 5.1e+02 2.0 3.7 1 20 280 299 280 302 0.90 8 19 0.052 6.5 7.9 0.3 2 23 309 329 308 329 0.95 9 19 0.61 76 4.6 0.4 3 11 337 345 336 348 0.89 10 19 0.49 61 4.9 0.8 1 22 432 453 432 454 0.72 11 19 2.7e-05 0.0034 18.3 1.5 2 23 463 485 462 485 0.95 12 19 6.1e-06 0.00076 20.3 3.7 1 23 491 513 491 513 0.98 13 19 0.051 6.3 8.0 0.4 1 23 517 539 517 539 0.97 14 19 4.1e-05 0.0051 17.7 2.1 2 23 546 567 545 567 0.96 15 19 5.2e-06 0.00064 20.5 0.1 1 23 573 595 573 595 0.98 16 19 0.041 5.2 8.2 0.7 1 23 601 623 601 623 0.97 17 19 6.5e-07 8.1e-05 23.4 0.2 2 23 630 651 629 651 0.97 18 19 6e-07 7.5e-05 23.5 0.6 1 23 657 679 657 679 0.98 19 19 1.1e-07 1.3e-05 25.8 1.9 1 23 685 707 685 707 0.99
Sequence Information
- Coding Sequence
- AtgccaatttttattatagtcgGTGAaaCGAAAAAATGGATTTCTAGAGTACCTCAAAAACTTATAGAAAGGGAAGATCAAAGCGCAGCCTTCGTTATTCTTCAAGAGATTGATGACAAAACTTTTGCACGAACAATTCTTGTTCAAGAGGTAACCCCGTACCACTGTGATTCATGCAATGAAGATTTTGATACAGAAGCCAGTTTGATAGTGCATAGAACGGAACAATCAATACTAAGAACCCGAGAAGCGTTGCGTCaagcagaaaaaaagaaacatgaaTGTGGCATATGCGGACAGACTTTCTCGAAAAAGTTGCAATTGATTAACCATCGCCGGATACAATGTAGGCAACTTCTGGACACACAAAAGAAGCAGGAATGGAAAGAAACAGTTATAGAAACACTTAAGAAGACTGAAACAATTaagaagacaaaaaaaattaaaaaaacagaaaaaatcaagaaggttcgagaaaaaaatgaggaaTTGTCAGCAGGTCCAGTTAAGTGTGATCAGTGTCATAAGAtattcaagaagaaaaaatatttgaatgtgCACAAAACGTTACATGGCGCACCGCACATTTGTCAGATGTGTGGCGCGAAGCTGACTTCAGAATATTATCTAAAGATGCACATCAGGCGGCACAACAAGCAATTTAcggaattttgcaaaatttgtaataagggTTTCTACTTAAAAGCTGTTCTGAAATATCACATGGCCATGCATATTGACGAAAAGCCCTGTATCTGCGAGATTTGTCACAAATCCTTTAGAAATCAAGTCAATCTCCGAAATCATATGAAGATTCATGCTGAGACGAGGAAGAAATTTAAGTGCGATATATGTagttttgaaacattttataactGTTATTACAAGGAGCACATGTGGATTCACACCGGTGAGAACAGTGTGACTTGTGAAGTATGTGGCAAGCTAATTAGAAGACAGTACATGAAGACTCACATCAGAATACACACTGGTGAGAAACCGGAGATTTGTGAATTTTGTGGCAAAGCATTCAGCGCTAGAAAgtGCGACGAGATTGACATAGAAGACATAAAACTGGATCCAATTGACGAATTGCAAGGTATAGAATTAGTACGATATCAAGATGAAGTACCTATAGCGGAAGAATATCATCACATTGGTCATCAAGAAATAGTTATGGAAACAATCGAATATAAGCCTGAAGATTCGAACGACAAACCAGAATCTGCATCAGAGATACGTATTCTAAAACAGGTTTCCGAATACGATTCGAATCGCAAACGTGCGACAGTTTACGAGTGTGAAATTTGTGGGAAGCAAATGCTCAAGAAGCTACAATTTTTAAAGCACAGACAAGACCACGAGAGAAATCCAAAGACTGAAGATCGTTGCGAGGAGTGCGATAAAGTCTTTGATAATCATGAGAAACtgcaaaaacataaaatcaaAGCACACCAAAAGGAGAAACCTTTTCAATGCGTTATATGCGGTAAGTGTTTCAAGACCGAGGAATTCTTGAAGACTCATCTGAAGCAGCATAATAAACGTTTCACCTGTGACATATGTGGTGTATCAAAAGTTTCCGGATATGATTTGCGTCTACACAAAAAGAAGCACAATCAAGAATATGTGATTCATTGTGAGACTTGCAACAAAGGCTTTTATACGAATCAAACATTGGAGCGGCACTTGCTCACTCACACCGGCGAGAAAccatttgtatgtaaaatatgtaacacCCCATATGCAAGCGCTGCATATCTCAACATGCATATGAGATCTCATggcgagagagagaagcaCAAGTGCAATATCTGTGACTTCGAAAGCTACTGGAAGGCCGCATTAAAAGTGCATCTTAAGATACATACTGGCGAAAATCAAATCACATGTGAAGTGTGCGGGAAATCTGTCAGCAGCAAAACGTATCTGCAAATTCACATGCGTATACATTCAGGCGAGAAGCCACACGTTTGCGAAGTATGTGGCAAGGCATTTAGCGTACGGAAATATCTAATCGTGCATTTAAGAACGCATACCGGCGAGAAACCTTACGAATGTAAGGTTTGTCAGAAGAGATTTACGCAACAGGGCTCATTAAACTCGCATATGAAATCTCATAATGAAAGCAAGtga
- Protein Sequence
- MPIFIIVGETKKWISRVPQKLIEREDQSAAFVILQEIDDKTFARTILVQEVTPYHCDSCNEDFDTEASLIVHRTEQSILRTREALRQAEKKKHECGICGQTFSKKLQLINHRRIQCRQLLDTQKKQEWKETVIETLKKTETIKKTKKIKKTEKIKKVREKNEELSAGPVKCDQCHKIFKKKKYLNVHKTLHGAPHICQMCGAKLTSEYYLKMHIRRHNKQFTEFCKICNKGFYLKAVLKYHMAMHIDEKPCICEICHKSFRNQVNLRNHMKIHAETRKKFKCDICSFETFYNCYYKEHMWIHTGENSVTCEVCGKLIRRQYMKTHIRIHTGEKPEICEFCGKAFSARKCDEIDIEDIKLDPIDELQGIELVRYQDEVPIAEEYHHIGHQEIVMETIEYKPEDSNDKPESASEIRILKQVSEYDSNRKRATVYECEICGKQMLKKLQFLKHRQDHERNPKTEDRCEECDKVFDNHEKLQKHKIKAHQKEKPFQCVICGKCFKTEEFLKTHLKQHNKRFTCDICGVSKVSGYDLRLHKKKHNQEYVIHCETCNKGFYTNQTLERHLLTHTGEKPFVCKICNTPYASAAYLNMHMRSHGEREKHKCNICDFESYWKAALKVHLKIHTGENQITCEVCGKSVSSKTYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGEKPYECKVCQKRFTQQGSLNSHMKSHNESK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00015541;
- 90% Identity
- iTF_00015541;
- 80% Identity
- -