Basic Information

Insect: Atta colombica
Gene Symbol: hb
Assembly: GCA_001594045.1
Location: NW:634091-636117[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.021 1.1 9.0 0.3 2 23 32 53 31 53 0.96

2 7 0.71 38 4.2 2.7 3 21 124 142 122 144 0.94

3 7 0.079 4.2 7.2 6.8 1 23 148 171 148 171 0.96

4 7 0.00069 0.037 13.7 6.0 1 23 177 199 177 199 0.99

5 7 0.039 2 8.2 6.0 1 23 205 229 205 229 0.93

6 7 0.2 11 6.0 0.0 2 20 524 542 523 543 0.90

7 7 0.029 1.5 8.6 2.5 1 21 551 571 551 575 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.021	1.1	9.0	0.3	2	23	32	53	31	53	0.96
2	7	0.71	38	4.2	2.7	3	21	124	142	122	144	0.94
3	7	0.079	4.2	7.2	6.8	1	23	148	171	148	171	0.96
4	7	0.00069	0.037	13.7	6.0	1	23	177	199	177	199	0.99
5	7	0.039	2	8.2	6.0	1	23	205	229	205	229	0.93
6	7	0.2	11	6.0	0.0	2	20	524	542	523	543	0.90
7	7	0.029	1.5	8.6	2.5	1	21	551	571	551	575	0.91

Sequence Information

Coding Sequence: atgaataagtATTGAACTGATCGATCGTTGAGCATCATGTCAAATATAATTCCATTACCCAGCGAGAGTATTAATCCCATACAAAACATTCTACAGTGTTCGTTATGTGTATTCGCTACATCAAACAGGTCAGAATTCAGCGAACATCTAATTAGCCATTACACATCAAAGTGCAATAATTCTAATCTTAAAGCCGTCTTTGCACATTTACCAATCCTTAAATCCCctttaaatcaaaatgataacaattcttcttttatactGGCggaatataaacataaaacagAAGAGACCGACGAATCTTCTCTTCATGTTTCTTGCGTGAATTTGCAAAACAAACAAGACAAAAGCTTTCGAGAGGCTAAGAATTGCAAACAGTGTAATTTTATAGCTAGCACGAAGATGGAATATTGGGAGCACATGCGTTGCCACATCAAAGGCTTTACATGCTCCGAGTGTTCCTTTGTTACCAAGTATAAACATCACATGAACCATCACTGGCTTAGTGTTCACGACGGCTCCAAGCCCTTTAAGTGCAAAAAGTGTTTGTATACATGCGTAAGCAAATCGATGTTAACTAGCCATCTGAAGAAGCACTCGAATATCTATCCGTACAGATGCGCGGATTGTACATACAAGACCAAGTTCTGTAACGCGTTGAAGAAACATTTGCGAAAAAAGAAGCATCAGCCAGCGATGGTGCTGAACGCTGATGGCTCGCCAAATCCGCTATCCATCATCGATGTCTACGGAACCAAACGAGGGCCCAAGCAGAAATCACCCGTTAAAAACCAAGAAACATCAAAAAACATTGTGGCAGCAAGCAACATAAACAATCAGCTCAATTCAACAGTGACTTCTTCACCTTTGTCACTTTCGTCAATTGCTCGTTGTTTGACTTTAACTGCAATAAACGGAATAAGCAATAGGCATTGGATAAATGATATGAACAAGAACCAATCTGTTACTATGTTTCCTTACAGCGATTTGATCGCCGCGTTCAATCTATCGAATCACGTTCTACTTCGCGAAGATGCGACATTAGCAGACGAAAATTTGCAGAAAACTGATAACGCACAGTCCGATATATTAACGGAATATGCAAAGATGTTTACAATTTTGAGTGCTAATAAAATGCCGGAAATGTTTGCTCaaagtttatttcattttgatacAACTAACAACATCGATGAACTCGATTTTTCCGATAATGTGAAGGCTACTAGTGAATCCTCGACATTCGTGGCAATAAAAACCCAACTAGAATGTCACAGGACTGAATCTATAGATATACCATTGGATCTTCGCATGAtcgatgtaattaaaaataatcatcttCAGTTTCAGGCATTAACTGATACAACCTCATCAAAAGTCTCAGGTACTAACAAACGTAAAGGTAAAGCGATAAAATTGGAACATcgcttgataaaatataacacaGATAAGAAATCAGAGCAAAACGAAGatgtatcttttaataaatctccatcagatgatttttataaagtaagccaaaaaatcaaaaacacACAAAAGGACAAAGCCGATTTATTTGATGCTAAACTCATCTGCTACTATTGTGGGATTGTATTCGGCAATGTGATCATGTACGCCGTACACATGGGTTGTCACAATTTTGATGATCCTTACACATGCAATATATGCGGCCATCAATGCATCAATaaactatctttttttttgcatatcgCTCAATCGGagcattaa
Protein Sequence: MNKY*TDRSLSIMSNIIPLPSESINPIQNILQCSLCVFATSNRSEFSEHLISHYTSKCNNSNLKAVFAHLPILKSPLNQNDNNSSFILAEYKHKTEETDESSLHVSCVNLQNKQDKSFREAKNCKQCNFIASTKMEYWEHMRCHIKGFTCSECSFVTKYKHHMNHHWLSVHDGSKPFKCKKCLYTCVSKSMLTSHLKKHSNIYPYRCADCTYKTKFCNALKKHLRKKKHQPAMVLNADGSPNPLSIIDVYGTKRGPKQKSPVKNQETSKNIVAASNINNQLNSTVTSSPLSLSSIARCLTLTAINGISNRHWINDMNKNQSVTMFPYSDLIAAFNLSNHVLLREDATLADENLQKTDNAQSDILTEYAKMFTILSANKMPEMFAQSLFHFDTTNNIDELDFSDNVKATSESSTFVAIKTQLECHRTESIDIPLDLRMIDVIKNNHLQFQALTDTTSSKVSGTNKRKGKAIKLEHRLIKYNTDKKSEQNEDVSFNKSPSDDFYKVSQKIKNTQKDKADLFDAKLICYYCGIVFGNVIMYAVHMGCHNFDDPYTCNICGHQCINKLSFFLHIAQSEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00182940;
90% Identity: iTF_00182940;
80% Identity: -