Acoo003023.1
Basic Information
- Insect
- Atta colombica
- Gene Symbol
- -
- Assembly
- GCA_001594045.1
- Location
- NW:1418702-1422139[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.043 2.3 8.0 1.3 1 23 158 181 158 181 0.97 2 9 0.77 41 4.1 0.2 2 23 293 316 292 316 0.93 3 9 0.082 4.4 7.2 0.8 1 23 356 379 356 379 0.96 4 9 5.6e-08 3e-06 26.6 2.8 1 23 385 407 385 407 0.98 5 9 2.6e-05 0.0014 18.2 1.7 2 23 423 445 422 445 0.94 6 9 5.1e-05 0.0027 17.3 0.4 1 23 451 473 451 473 0.98 7 9 0.00047 0.025 14.2 1.7 1 23 479 501 479 501 0.97 8 9 0.00023 0.012 15.2 3.2 1 23 507 530 507 530 0.98 9 9 0.089 4.7 7.1 0.4 1 23 537 559 537 559 0.93
Sequence Information
- Coding Sequence
- ATGAGTGAAGAAATGAATGACATATCCTACTTAAGCTATGACATAAATGGTACAAGATACATTTATAAACTTGCACCATCATCGACAGACATTATGAAGAATTCAGCAGTGAGTGAAGAACAAACTACAGTTGATATTGCTAAGGGAAGTGAATTGGACAGTGGAGAAGAACCGATTTCATTAGTGTGTTTGAATGGACAGGtatatgcaattaaaaatggaGTAATTGAAGAGGTGGGTACCAATCTGCAATCTATAGAACAAACGAGTTACAATGAAAAGGCACTCTTGATGTCAAAGAATATggaaaataacgaaaataattatatcaagaaTGAGAATATAGTAATCGAAAGTCCATACAGACAATCTGAGGAGCAATACGAAGTCGCTACAGAGGAAGCAGTGAAAGATCTCGTTAGGCAAGATGACAACGTTAACGTCGATAATTTCTTAGAAGTTGTGACTGCTTTTAAATGCAAGATGTGTACTTATCTGTCTCAGGACAAGATGCAATTATTAGATCACATTCAGAAACTACATTTAAATTCTACTATAGATATTACAccaAAGGAAGAATCTAAAATGGATGAagtaaaaatagtttatatgtGTGCGGAGTGTTCCAACTGCTTCCATTCTTTTGAGGATTGTAAAGAACACATGATTAATGATCATCAATTAACAGACATTGCGAGTGATGAGGctggaaaagaaaatttgacaGACCTAACGAATCCTAGCTTGGTAACTGAACATGAGGCTCAACATATCGAAAGCAACAAAGCAGAAAAAGATCCAGTAAAAATTTCGAAGACCTTAAATTCAGAATATATGCGTAATAGGAAAATGATAGAGTCAGCGGAAAGAAATGTCAAATGTTCTTATCAGGGCTGCCAATACAAATTCGCCTCGGAAGAAATTATGCAGCAACATATTCTTTACCATACAGAATCTGAAACTGCAACAACATTTAAATGTACCATATGTCGAGATATGAAGTTTACGAAGTGGCGCCAATGTAACTTGCATTTATGGAAGAAGCACCAAATTGACATAGGCTTGTTTAcctgtaaaatttgtaaagtcTACAAAAGTGCTACCATGGTAAAACTCTTGACGCACATGAGGGTACACAGTGATACTCGTGATTACAAATGTCCCGATTGCgagaaatgtttcaaacaaGCTAGCCAGTTACGTAATCATCGCATAATGCATTTAGATCGCAAAACATTAGAAGTAACTCGATGGTATACTTCTAAGACATGCGACATGTGTGGTAAAACATATGCGaattcaaaatgtttaaagaatCACATTCAAGCTGTTCATTCCAAGTTACGTCCATACGTTTGTAACGTTTGCGGTCATGCTAGTGCCAGAAAGGCAATGTTACAAATGCATTTACGTCAACATACAGGAGATAAACCTTTCAGCTGCGAGATTTGTGATTACAAAACTGGAGATCATAATACCTTACGACGGCATATTATGCAACACACAGGATTTCGACCATATAAATGTCCACATTGCTCATATAGCGCGATACAGAGCAgtagttataaaaatcatttaaaatcgaGGCATCCTTTGCTGTCTGGCTTATTTACATGCGATCTGTGTCCTTTTAAAACggttaaaaatgaaagttacATCCAGCACTTAGGTGACCATGAAAAaggtttaataaaatctaatgtGCAAAAAAAAGataacgAGAATGTTGAAGTCTTTCCTGGTAATATTGCGGCAGCGCAATTAGTTTATAGCTGTTTAGGTGCCTTTTCGAAAGATGGAGATACATTAGAAGCTAATTTGATGTCTTCCTCAACATCTGCTGATGGTACTTCTCAAACCATCACGATACAAATACCATCGAAACATCTTCAAGGTTCATTATCAACAAGAGAAagtttaaacaaaaatgattctATTGAGCAAGAAGATGATGAAACAATGCATTGCTTCTTAAAAATTCctagagaagaagaagaaagtatAGACACTGGTGGTATAACGATACCTGCAGAACCTGAAGAAAGAGATATTAGAACCATTGATATTGAAGAGACGAACATAGCAACTAGTGATATTGAAGAAacaaatgtaacaaatatcgatattgattcatga
- Protein Sequence
- MSEEMNDISYLSYDINGTRYIYKLAPSSTDIMKNSAVSEEQTTVDIAKGSELDSGEEPISLVCLNGQVYAIKNGVIEEVGTNLQSIEQTSYNEKALLMSKNMENNENNYIKNENIVIESPYRQSEEQYEVATEEAVKDLVRQDDNVNVDNFLEVVTAFKCKMCTYLSQDKMQLLDHIQKLHLNSTIDITPKEESKMDEVKIVYMCAECSNCFHSFEDCKEHMINDHQLTDIASDEAGKENLTDLTNPSLVTEHEAQHIESNKAEKDPVKISKTLNSEYMRNRKMIESAERNVKCSYQGCQYKFASEEIMQQHILYHTESETATTFKCTICRDMKFTKWRQCNLHLWKKHQIDIGLFTCKICKVYKSATMVKLLTHMRVHSDTRDYKCPDCEKCFKQASQLRNHRIMHLDRKTLEVTRWYTSKTCDMCGKTYANSKCLKNHIQAVHSKLRPYVCNVCGHASARKAMLQMHLRQHTGDKPFSCEICDYKTGDHNTLRRHIMQHTGFRPYKCPHCSYSAIQSSSYKNHLKSRHPLLSGLFTCDLCPFKTVKNESYIQHLGDHEKGLIKSNVQKKDNENVEVFPGNIAAAQLVYSCLGAFSKDGDTLEANLMSSSTSADGTSQTITIQIPSKHLQGSLSTRESLNKNDSIEQEDDETMHCFLKIPREEEESIDTGGITIPAEPEERDIRTIDIEETNIATSDIEETNVTNIDIDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00885434;
- 90% Identity
- iTF_00417863;
- 80% Identity
- -