Basic Information

Insect: Atta colombica
Gene Symbol: salm_1
Assembly: GCA_001594045.1
Location: NW:490735-581060[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.9e-05 0.001 18.6 1.0 1 23 370 392 370 392 0.98

2 9 7.7e-06 0.00041 19.8 2.1 1 23 398 420 398 420 0.98

3 9 3.5 1.9e+02 2.0 3.3 3 23 783 803 782 803 0.92

4 9 3.4e-08 1.8e-06 27.3 0.6 1 23 809 831 809 831 0.97

5 9 5.5e-05 0.0029 17.2 3.5 1 23 841 863 841 863 0.98

6 9 0.0096 0.51 10.1 3.2 2 23 1157 1178 1156 1178 0.97

7 9 0.028 1.5 8.6 1.0 1 14 1184 1197 1184 1198 0.92

8 9 4.5e-07 2.4e-05 23.7 2.1 3 23 1427 1447 1425 1447 0.96

9 9 1.6e-07 8.2e-06 25.2 0.9 1 23 1453 1475 1453 1475 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.9e-05	0.001	18.6	1.0	1	23	370	392	370	392	0.98
2	9	7.7e-06	0.00041	19.8	2.1	1	23	398	420	398	420	0.98
3	9	3.5	1.9e+02	2.0	3.3	3	23	783	803	782	803	0.92
4	9	3.4e-08	1.8e-06	27.3	0.6	1	23	809	831	809	831	0.97
5	9	5.5e-05	0.0029	17.2	3.5	1	23	841	863	841	863	0.98
6	9	0.0096	0.51	10.1	3.2	2	23	1157	1178	1156	1178	0.97
7	9	0.028	1.5	8.6	1.0	1	14	1184	1197	1184	1198	0.92
8	9	4.5e-07	2.4e-05	23.7	2.1	3	23	1427	1447	1425	1447	0.96
9	9	1.6e-07	8.2e-06	25.2	0.9	1	23	1453	1475	1453	1475	0.98

Sequence Information

Coding Sequence: ATGTCACGGAGAAAGCAGGCCCGACCGAGTCGTGCTCATCTCGAGGAGGATCTTGTCCAGAGGCCTCTGTTGACCAATCCCATTGGAACTGTCGCGGGCAATATCCgAGAAGAAAATGACTTTACATCAGATGGTGAAGAGAGTGGTGGTGGTGGAGGAGGTGGCGAGGAAGCCGTGGATCTCACAGCGACGAGATCTCATCAGGGCGATGATGATCCTATGGAAGAGGATGAGGAAGAAGGTATTGATGAACAAGACGAGCAGGATGAAGATGAGGAGGGCTCTCGCAAACAGATTCATCATCGACAAGACGCGgagaacaataataattttgtggaGAGCGGCTTACCTACCGCTATATTCCCACCAGCTGGAACTAGTCACGTCACCCTCGAAGCCCTTCAGAATACAAAAGTGGCGGTCGCTCAGTTCGCTGCCACTGCTCTTACTGGGGCAGATAGCGAAGCGGCGCTACAAGACCTGGCATTTCTGGAAAATACACTGTGCACCCTTCAGAATCAACAGGTATTACAATTACAGCTGATTCGACAACTTCAGCAGCAATTATTGATCACTCACGGGCAATCGGTAATGCAATCGTCGACGGAACCAACCGATAACAAAGAGGCTTCGTCGTCTCCTATTATTCATCCGAAACCATTGTCGAGTCTCGCGTCACCTCCTTCTTCTCGTCCACCAAGTCATCATCAGCAAACATCACCGGCGCCGCTGACACCGAATCTACTTCAGGAACGACCCACTTCGACGAGCAGCGCCTCTCCTTTGAATCTACCCTTATCTTCGTCCAGCACGACATCAACTGTCATTACGACCACCAGCAACCAGATGCCGATGCCACATCAAATACCACATTGCTCGATAAGCGCTTCTCTCGCTTCATCGATCATAACGAATACCGATCCGCCTCCACTTCACGAGCCAAATACTCTGGATATTCTTCAAAAACGTACCCAGGAAGTATTGGATAATGCGAGTCAAGGACTAGCTAACAATTTGGCCGACGAGCTCGCGTTTAGAGGCAAGGGCTCGCGACTATCTCCTTATGATTCGAAATCAAGCGGTGGTCGCGGCGAGCCCTTCTTCAAGCATCGATGTCGCTTCTGTGGCAAAGTCTTCGGTAGCGACTCGGCGCTACAAATCCACATACGATCCCACACAGGTGAGCGACCTTTTAAGTGCAACGTATGTGGCAGTCGATTTACGACCAAGGGCAACCTGAAGGTCCACTTCCAAAGGCACACGGCCAAATTTCCACATGTTAAGATGAATCCGAATCCTGTTCCAGaacatttagataaatatcacCCACCCCTCTTGCAGCAAATTGCTTCCGGGAGACCGATGCCGTctccgccgccgccaccaccaccaccaccaccatccTCTCATCACCCCTCGTTTCATCCGACAACAACGCACGGTTTCCTCCCACCACAACCCATACCTCTCACCTTATCCAATATGACGCCCCTTTATCGATCTCCAATTATTAATCATCGGGATGATCAAGATGTACCAGAGAATCTTAGTAAACCTATAACCACCGCTCCACAGACATCTCCCACTTCTCCCGCTGCCGTATTGAATTCTCGTCATTCCTTTCATGACAATCTCCATCAACAACATCAAAAGCAGCAGCTTGAACAGAGAGAAGAGATAAAACTCGAACAGAGATCACCCGGACAGGAGCAGTATCAACGACCGATGAGTCGGGAAGGCGCTGAGCGAATAACACCGAAGAGAGAACCTGAGGAAGCGGAAGAAGCTGCAGAGGAAGAGAGCGAAGATTTTGAGGACACCACGAGACGATACCTTAATTCACCTCAATCTGCAAATCCACCGTCCCAACCGCAAACGTACGAGGATTGTAGTATGGATAGCAAAATCAGTGGACGTTTAGAGGGCGACGGAGAGATGGAAGTGGACGAGGAAATAGAAGAGCAGCCTGAAAACCTCTCAGGCAGAGGTACAATTAATCGTTTGCCTCAACAGATCGTGACGTATCCAGGAGCATCACCAGCCAGCAGTAGCGCGAGTAGCGGTAGTCTACAGACATCTTTCGCTGGAATTCTGTTTCCAGGTCCTCCGGCTCATCATCAAATTCCTCATCTTCCTGTTTCTACACAGACAGGACCAACCATGGCATCCGGAAATGAAATGATCGATCCAGCCAAGGATCCAGCGATTTATTCGACTTTACTACCACGGCCAGGTAGCAATGATAATTCCTGGGAGAGCTTGattgaaataacaaaaacttCAGAGACGTCCAAGCTACAGCAACTAGTCGACAATATCGAGCATAAACTGAGCGATCCTAATCAGTGCATCGTTTGCCACAGAGTGCTCTCATGCAAGAGCGCGTTACTGATGCATTATCGCACTCACACTGGCGAACGTCCTTTCAAGTGTAAAATTTGCGGTCGTGCTTTCACGACGAAGGGCAATCTGAAAACCCACATGGGAGTGCACAGAGCTAAACCACCACTGAGAGTGTTGCATCAGTGTCCTGTATGTCACAAGAAATTTACGAACTCTCTCGTATTGCAGCAACACATACGTCTTCATACCGGAGAACCCACTGATCTCAGTCCGGAACAGATTCAGGCTGCAGAAGTAAATGAGTTCCCACCCGGTTACCATCCATTGGCATCTTTTCTCCCTCAAGGCTTTCCACCGATACATCCGACCAGTACAGGCTTCTCCTTAGGATTCCCTCCATCCAGGCAAACGGCCATCGAACAACAATTACAGGAGAGCGACGTCGAAACGAAAGAGGAATCTCAGCACCAACGACAGAGATTTATGGAGGAGCATAGCGAAGAGATGGAAGATCAAGAAGACGAAGAACAAGATCACAGAGAGGACGATGAGAGGTGCGAATTGAATCGTGATAGGCGTAGCGTCGAAATTGAAGAGGAGCAGGATCATGAAAGCGAAGATACAACCGAACACAAGGACGTAACGCTTCCTATATTTTCGACTTCGTTGGCAGCACTCGAGAACCAAGTAAGGACTATCACGACGACAGCCACGACTATGAATGTAGCTAGATCGCCGTCCTTTCATCGATACAACGGTAGCGAGAAGAGCACTAGCCCACTAACATCCGGAGCTCCGCTCGACTTGACGCCCCGTGCTTCATCCACGCCAGCGTCGGTGGCTTCAGCATCGCCCACACCACCACCCCAAACCACGCCGCATCATCCACCAAATCCTTTCGGCATGTTTGCGGGACTGCTACAAGCGGTTTCGTCCACTCCTGCTACTAGCACGATAGGCACTTCGAACATAAACAGCGTCACGTCGATGAATGCCGTGAACCCGGGAAGTGGGCCCGGCACTGGACCACTAGCCTCGCTGACCACTTCAGCTGTATTAGCCGCATCATCGACCTACAATCCGCTTGGCCTAGCTGTTGGAGGCCCAGCAGTACGTGGCAACACCACATGTAAATTCTGCTACAAGACGTTCGCGTGCCAATCTGCATTGGAGATTCATTACCGGAGTCATACGAAGGAGCGACCTTTCAAATGCAGCATATGCGATCGAGGTTTTTCTACGaagAACGATGATTCCGGTCAGCAAGTATGTTCCTGCGCGGATCAACCCTTCGCCGCGAAGGGTCCGATTCTCCCACAACCCAATTCCCAATATCGCTCGTACCCGGCGAAATCGGCCGCCGGAAATAGTGAGAAACCGAAACGCAGGCGGCGGCGGCCTGAGGAACGGAAGAACCGGGGGCGGACAGGAACAGGAGGGGGGCGAAGGCTGACGTCTGTTTATCCTGCCGTCCGCCTGCCCCCGCTGATGCCACCCGCCCTCGGACTTCTACCCTCGGACCACGTCTTCCTGGGTAATATGAAGCAGCATATGTTGACTCACAAGATTCGCGATATGCCGCCACATCTGTTCAGCGATCCAAAGCatcaacagcagcagcaacagcagcaacaacaacaacaacagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcaacaacaacagcaacaacaacaacagcagcagcagcaagaACAAGAGACTTCCAGAAGTCCAATGTGCATTGATGATTCGAGCCTACCGCCCCCACCTCCACCACCTCCACCACCCCCGCCGATGCCACCGACGTCCATCGAATCCACAATACCGGTGAAAAGATCGCCGGAAGGAGATCTGCCAGCACCAAAAAGACCAGCCAGCCTGCCGAGCAAGCATTTGTGCCAGATTTGCAATAAGAATTTCTCCTCGTCTTCGGCGCTCCAGATCCATATGAGAACTCACACTGGTGACAAACCATTCCGATGCACTGTCTGCCAGAAGGCGTTCACCACCAAAGGCAACCTCAAGGTGCACATGGGTACTCACATGTTTACCAACGGAACGTCACGCCGAGGTCGACGGATGTCATTGGATATACCTCCCCTGCCAATCACGCCCAAGGACTCGGAATTTCTGCAAAGACGACCGGACCTTTTTTACCCGTATCTTCCCGCGCCATTCCTTAACGGCGTCCAGCAGAAGCTGAACGAGATTTCGGTGATTCAAAGTAGCAACGGGTTACCACCCCATTCCTTGAGCGCGGGCAAATACGCGGCAAGTCTATTCGGCTCGGTGTATGGTGCCGGCGGAGGTGGCTTCTCCTTGGATAAACCAATGGGGCCAACAAACGGACCTCTAGTGGATGGCAAGTCCGCGATACCTTCGGGATCCATGCTCTTCCAAACACCATCGCCCTCGCATTCACCTGGCGCGTCATCCAATGGTAATCAGACGTCCGCTAGCGTGTCTTGGACCGGCGATACTCTTCAGCACCATTTCGATCGAGAAACACCGAACAGAACGGAGAATGATGCCACACCGCCCACAGCACGGTTACCACCGCCACCAGCGAGAGGAGAGGGATTAGCTGCGTGA
Protein Sequence: MSRRKQARPSRAHLEEDLVQRPLLTNPIGTVAGNIREENDFTSDGEESGGGGGGGEEAVDLTATRSHQGDDDPMEEDEEEGIDEQDEQDEDEEGSRKQIHHRQDAENNNNFVESGLPTAIFPPAGTSHVTLEALQNTKVAVAQFAATALTGADSEAALQDLAFLENTLCTLQNQQVLQLQLIRQLQQQLLITHGQSVMQSSTEPTDNKEASSSPIIHPKPLSSLASPPSSRPPSHHQQTSPAPLTPNLLQERPTSTSSASPLNLPLSSSSTTSTVITTTSNQMPMPHQIPHCSISASLASSIITNTDPPPLHEPNTLDILQKRTQEVLDNASQGLANNLADELAFRGKGSRLSPYDSKSSGGRGEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGRPMPSPPPPPPPPPPSSHHPSFHPTTTHGFLPPQPIPLTLSNMTPLYRSPIINHRDDQDVPENLSKPITTAPQTSPTSPAAVLNSRHSFHDNLHQQHQKQQLEQREEIKLEQRSPGQEQYQRPMSREGAERITPKREPEEAEEAAEEESEDFEDTTRRYLNSPQSANPPSQPQTYEDCSMDSKISGRLEGDGEMEVDEEIEEQPENLSGRGTINRLPQQIVTYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPHLPVSTQTGPTMASGNEMIDPAKDPAIYSTLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLSDPNQCIVCHRVLSCKSALLMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNSLVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPGYHPLASFLPQGFPPIHPTSTGFSLGFPPSRQTAIEQQLQESDVETKEESQHQRQRFMEEHSEEMEDQEDEEQDHREDDERCELNRDRRSVEIEEEQDHESEDTTEHKDVTLPIFSTSLAALENQVRTITTTATTMNVARSPSFHRYNGSEKSTSPLTSGAPLDLTPRASSTPASVASASPTPPPQTTPHHPPNPFGMFAGLLQAVSSTPATSTIGTSNINSVTSMNAVNPGSGPGTGPLASLTTSAVLAASSTYNPLGLAVGGPAVRGNTTCKFCYKTFACQSALEIHYRSHTKERPFKCSICDRGFSTKNDDSGQQVCSCADQPFAAKGPILPQPNSQYRSYPAKSAAGNSEKPKRRRRRPEERKNRGRTGTGGGRRLTSVYPAVRLPPLMPPALGLLPSDHVFLGNMKQHMLTHKIRDMPPHLFSDPKHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEQETSRSPMCIDDSSLPPPPPPPPPPPPMPPTSIESTIPVKRSPEGDLPAPKRPASLPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMFTNGTSRRGRRMSLDIPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSSNGLPPHSLSAGKYAASLFGSVYGAGGGGFSLDKPMGPTNGPLVDGKSAIPSGSMLFQTPSPSHSPGASSNGNQTSASVSWTGDTLQHHFDRETPNRTENDATPPTARLPPPPARGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417805;
90% Identity: iTF_01421750;
80% Identity: -