Basic Information

Insect: Atta colombica
Gene Symbol: -
Assembly: GCA_001594045.1
Location: NW:1718794-1721764[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0015 0.079 12.7 0.5 2 23 120 141 119 141 0.96

2 11 0.0028 0.15 11.8 5.0 2 23 210 231 209 231 0.95

3 11 6.8e-06 0.00036 20.0 3.1 1 23 368 390 368 390 0.98

4 11 3.3e-06 0.00018 21.0 0.6 1 23 396 418 396 418 0.98

5 11 2.5e-07 1.3e-05 24.5 0.9 1 23 424 446 424 446 0.98

6 11 1e-05 0.00055 19.4 1.8 1 23 458 480 458 480 0.98

7 11 6.3e-08 3.4e-06 26.4 2.9 2 23 487 508 486 508 0.98

8 11 1.4e-07 7.2e-06 25.4 1.6 1 23 514 536 514 536 0.98

9 11 1.4e-06 7.4e-05 22.2 1.7 1 23 542 564 542 564 0.95

10 11 4.6e-05 0.0024 17.4 5.2 1 23 570 592 570 592 0.97

11 11 1.4e-06 7.4e-05 22.2 4.1 1 23 598 620 598 620 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0015	0.079	12.7	0.5	2	23	120	141	119	141	0.96
2	11	0.0028	0.15	11.8	5.0	2	23	210	231	209	231	0.95
3	11	6.8e-06	0.00036	20.0	3.1	1	23	368	390	368	390	0.98
4	11	3.3e-06	0.00018	21.0	0.6	1	23	396	418	396	418	0.98
5	11	2.5e-07	1.3e-05	24.5	0.9	1	23	424	446	424	446	0.98
6	11	1e-05	0.00055	19.4	1.8	1	23	458	480	458	480	0.98
7	11	6.3e-08	3.4e-06	26.4	2.9	2	23	487	508	486	508	0.98
8	11	1.4e-07	7.2e-06	25.4	1.6	1	23	514	536	514	536	0.98
9	11	1.4e-06	7.4e-05	22.2	1.7	1	23	542	564	542	564	0.95
10	11	4.6e-05	0.0024	17.4	5.2	1	23	570	592	570	592	0.97
11	11	1.4e-06	7.4e-05	22.2	4.1	1	23	598	620	598	620	0.99

Sequence Information

Coding Sequence: ATGTTTATAGTCACGAAAGAGATCGACAGTGAGAACATCAGCAAATTGTGCCGCACATGCTTGCGGGAAGACGGCGATAAAATGGTATGCTTGTTTGTGGGACCAGCTGGTTCCTCACTCGCCGCTAAATTACGATCTCTCTCTTGTTTGGAAGTCTGGCAAGGAGACGGCTTGCCTGAAAAGATGTGCGACCGTTGTGTGACCAGAGCGGAATCAGCTCTTTTGTATCGAGAGCAATGTCGCGCTGCTGACAGGgTATCCCGATTGACATCATACACTACTGTTTCCGGCTGTAAGCTCTATCAAAATCAACAGAATCAAGGATTCATGCCCGTACAAAATTCTCACAAGACACTAAAATGTGTGGAATGTGGTGCAGTATTTATGAATTATCAGGAGCTATGTGCCCATAACCGACTCCATTTGCCATTTATTCAGGACAACATACCTATGCAACATATGCACATAGTGGAGTCTCAGAATccatatcttaattttactcATGTTAGTTCAAATTTTGCAAACGATAACATTCCAAGTACACAATTATCTCCATTAATTAGACCAAATATGATGCATACTATGTCATTGAACGAAGAAAGTTCAAGTCGAGCTGCTTGTGCCTTACATTGTTCCTTGTGCAATCACACTTTTACTAATAGAAGACAGTTAATAAGTCATAATATAACGCACAGTACGGAGAGTGTCGATATGTCGTGCGACAATGAAAACATAGAAATTTGTGAGAATTCTAATCATATCCCACAAAATTTAAGTTACGAAAGATCAATTCATTCGGTGGATAATCCTATTCAAAACTTGTCATATCAGCGATCCACCGTGGATGGTACCGATGGAATACAGAATATAAACTTTCCGGAAAATATAGATCTTGATGGAGTCCAGGAAAGCAGTTCGGAACGTATGCAAAATGTAACGATACATTCTGAAAACAATGTGTCGATTGCCGAAAACTTGAGGTTTATAAAATCGTCTGGAAAAGACAGGCAACTCGCGATTGAATATCACGGATGTCAGAgtgatgataattataaagaatctCTCGACATAAAAACTACAGAAGATGTTAATGCTAAGAAGCATCAGTGTGAAATATGCTCGAgacaattttcacaaaaatctaaattatttgcTCATCAGCTATCTCATTCTGGTCAGCAaccatttaaatgtttaagttGCGGCAAAGGATACGCATCGAAAAGCAAACTCAGTGCACATATGAGATTACATACCAAAATCAATGTACATCAATGTAAAGTgtgcgataaaatattttcatatccaTCATATTTGGAGGAACATATAAAGGTccataataaaagtaataatacatCGCAAAGCAAGGATTATGAATGTACGACTTGTAACAAACGTTTTcggcttttaaaaaatttgaaagctCACGAAAGACTCCATACCGGAAAAGGTTTGGTGCAATGCgaaatttgtgataaaaaatttagtcataattataatctgaAAATGCACTTGCGAACACACAAAACATCAAGAGTACATAAATGTGAGTATTGCGATAAGCGCTTCGTACAGAAAGGTAATTTGGTCGAACATTTGCGAATTCACACTAAAGTGAAGCCTTTCGCATGTAAATTGTGCGGCAAGAGATTTGCGCAATCGAGTCACCTTAAAAGTCACGAAGCCTCCCACGGTACATTGAGGCAACATCAATGCCGATTATGTGGTAAGAGATTCAAGCTGGCCAATCATTTGAAACGGCATTTAAATTTACACACCGGTACAAAGACTTATAAGTGCAATCAGTGTAACCAAATGTTTTCGCAATCTTTTAGTCTAACGAGACACTTAAAGAAACATAATGAAtcgcatatataa
Protein Sequence: MFIVTKEIDSENISKLCRTCLREDGDKMVCLFVGPAGSSLAAKLRSLSCLEVWQGDGLPEKMCDRCVTRAESALLYREQCRAADRVSRLTSYTTVSGCKLYQNQQNQGFMPVQNSHKTLKCVECGAVFMNYQELCAHNRLHLPFIQDNIPMQHMHIVESQNPYLNFTHVSSNFANDNIPSTQLSPLIRPNMMHTMSLNEESSSRAACALHCSLCNHTFTNRRQLISHNITHSTESVDMSCDNENIEICENSNHIPQNLSYERSIHSVDNPIQNLSYQRSTVDGTDGIQNINFPENIDLDGVQESSSERMQNVTIHSENNVSIAENLRFIKSSGKDRQLAIEYHGCQSDDNYKESLDIKTTEDVNAKKHQCEICSRQFSQKSKLFAHQLSHSGQQPFKCLSCGKGYASKSKLSAHMRLHTKINVHQCKVCDKIFSYPSYLEEHIKVHNKSNNTSQSKDYECTTCNKRFRLLKNLKAHERLHTGKGLVQCEICDKKFSHNYNLKMHLRTHKTSRVHKCEYCDKRFVQKGNLVEHLRIHTKVKPFACKLCGKRFAQSSHLKSHEASHGTLRQHQCRLCGKRFKLANHLKRHLNLHTGTKTYKCNQCNQMFSQSFSLTRHLKKHNESHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01016013;
90% Identity: iTF_00128419;
80% Identity: -