Basic Information

Insect: Atta colombica
Gene Symbol: -
Assembly: GCA_001594045.1
Location: NW:541440-558361[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.1e-05 0.0022 17.6 1.4 1 23 462 484 462 484 0.96

2 17 1.5e-05 0.00078 19.0 1.9 1 20 490 509 490 512 0.94

3 17 1e-05 0.00054 19.5 1.4 1 23 518 540 518 540 0.98

4 17 5.9e-05 0.0032 17.0 4.4 1 21 546 566 546 568 0.95

5 17 8e-06 0.00043 19.8 5.6 1 23 574 596 574 596 0.99

6 17 1.8e-05 0.00097 18.7 5.3 1 23 602 624 602 624 0.97

7 17 6.9e-05 0.0037 16.8 6.9 1 23 630 652 630 652 0.96

8 17 6.8e-08 3.6e-06 26.3 2.7 1 23 658 680 658 680 0.98

9 17 5e-05 0.0027 17.3 6.7 1 23 686 708 686 708 0.97

10 17 1.6e-05 0.00083 18.9 5.8 1 23 714 736 714 736 0.98

11 17 3.2e-07 1.7e-05 24.2 2.8 1 23 742 764 742 764 0.98

12 17 1.9e-05 0.001 18.6 9.1 1 23 770 792 770 792 0.98

13 17 2.5e-05 0.0014 18.2 7.5 1 23 798 820 798 820 0.98

14 17 0.0012 0.065 12.9 8.8 1 21 826 846 826 848 0.94

15 17 9.3e-06 0.0005 19.6 0.4 1 23 854 876 854 876 0.98

16 17 0.022 1.2 8.9 4.5 1 23 886 908 886 908 0.98

17 17 3.6e-07 1.9e-05 24.0 1.3 1 23 914 936 914 936 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.1e-05	0.0022	17.6	1.4	1	23	462	484	462	484	0.96
2	17	1.5e-05	0.00078	19.0	1.9	1	20	490	509	490	512	0.94
3	17	1e-05	0.00054	19.5	1.4	1	23	518	540	518	540	0.98
4	17	5.9e-05	0.0032	17.0	4.4	1	21	546	566	546	568	0.95
5	17	8e-06	0.00043	19.8	5.6	1	23	574	596	574	596	0.99
6	17	1.8e-05	0.00097	18.7	5.3	1	23	602	624	602	624	0.97
7	17	6.9e-05	0.0037	16.8	6.9	1	23	630	652	630	652	0.96
8	17	6.8e-08	3.6e-06	26.3	2.7	1	23	658	680	658	680	0.98
9	17	5e-05	0.0027	17.3	6.7	1	23	686	708	686	708	0.97
10	17	1.6e-05	0.00083	18.9	5.8	1	23	714	736	714	736	0.98
11	17	3.2e-07	1.7e-05	24.2	2.8	1	23	742	764	742	764	0.98
12	17	1.9e-05	0.001	18.6	9.1	1	23	770	792	770	792	0.98
13	17	2.5e-05	0.0014	18.2	7.5	1	23	798	820	798	820	0.98
14	17	0.0012	0.065	12.9	8.8	1	21	826	846	826	848	0.94
15	17	9.3e-06	0.0005	19.6	0.4	1	23	854	876	854	876	0.98
16	17	0.022	1.2	8.9	4.5	1	23	886	908	886	908	0.98
17	17	3.6e-07	1.9e-05	24.0	1.3	1	23	914	936	914	936	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACTGCGACCGCGAGTCTTGGCAATGTAGGGAGTACTCCCCATTCATCCGCGGACCTGCGTGTAGGTACTGCCGTAGCGTTAGCCTCCTCGGTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCACCAATCTGTTTTCTCCCGGACCGCTACCTCAAGTTTCGGTCTATCACCATTCCCACCACAACTCCTCGCATAGGAGTGGTGGCGGTGGGGAGACATCATCCTCCAAAGAGCCAGCCTCTTCACTGAACCAGGAAATGGCGTTGACTTCCAGCTCGCACCATCAACAACAGTCAACAGCCGCGCATCATCATCAGCCTTCAGttagcagcagcagcagccaCCACAGTTCTCTGCAGTCGAATCCACAGATTCCTGTGTCTCTTCCCGGCCTTAATTTAGACGGCGCACATCTACCAGCGAGTGTTAGTCATCTGGCTGCACATGCACAAATGCAACAAATGCAGGCGCAAGCACAACAGCAGCTGCaccagcagcaacagcagcaaccgccgcagcaacagcagcagcagcagcagcagtcTCATCATCAAATACCGAATCATCAGAATGCTCAGAACAACGGGCCAACGGCGCATGGCCAGAACGCGCAACGAGATGACAACAAAGTCAAGGACGAAGGCGGTAGTTGCACTACCGAGCGCTGCAGCGACAATCAGGTTCATTGTCAAGTTCAATGCGATCTGCAATTACAACCACCCCAAGATCTTCAACAGAGCTTGatgcaacagcagcagcagcagcagcagcagcagcaacaacagcagcaacagcagatTGGAGTCAACATCAGCGGTAACTCCACCACCGAGGGGGGAAACCAGAACAACTCCGAGAAACCCGAAAAAGAGAAGGAATTGCGGCAATTGAATATGACCCAATTTCAAGTCCCTGACTTGAAACCTGGAGGACACATGATGGATGTAAGGACAGCAGATGGATCGGTTGTCAAAATTAGCGCAGGAAACGAGCAAGATTTAGCTAAGACTCTTGGCGTCGAAATGgtacaaaatatgtacaagGTTAATGTTGAAGATATTAATCAACTCTTGGCGTATCATGAAGTTTTTGGAAAGTTGCAGAGCGAAATTGCAGCTGGAACGACTTTAGTAGGTAGCACTGTGCCTACGCAAACAGTTACCACGATACAAAATGGCACGCCAATCGTGCAGCAGGTCCAATTGAACAAATTTGACATAAAGTCAAGCGACGGCGAAGCGACACCGGGTCCGAGCGCATCGCCCGTGTCTGTAGGCAGCCATGCTTGTGAGATATGCGGAAAGATCTTCCAATTTCGTTATCAACTCATTGTACATCGCAGATATCATACTGAGAGGAAACCATTCACATGTCAGGTATGCGGTAAAGCGTTCTCGAATGCGAATGATTTGACACGTCACGGCAAATGTCATCTGGGTGGATCTATGTTTACCTGTACTGTTTGCTTTCACGTCTTTGCGAATGCGCCTTCACTAGAACGTCACATGAAGAGACATGCTACCGATAAACCATACAATTGTACGGTCTGCGGTAAGAGTTTTGCGCGCAAAGAGCATTTGGATAACCACACAAGATGTCATACTGGCGAGACGCCGTATAGATGCCAATACTGTTCGAAGACATTTACTCGAAAAGAACATATGGTAAATCATGTTCGCAAACATACTGGTGAGACTCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACATTTTATGAACCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGTCAAGCTTGCGGCAAGAAGTATACACGCAAAGAGCATCTCGCTAACCATATGCGCTCACACACAAACGACACACCGTTTCGTTGTGAAATATGTGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCATACGGGCGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACGTTCACGCGAAAGGAACATCTCCTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACATCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTTCATACTGTCCGAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTAACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTTTGCCAAAGGACGTTCACTAGGAAAGAACATCTAAATAACCATCTCCGTCAACATACCGGAGATTCCTCACACTGTTGCAACGTATGCTCCAAACCATTCACAAGAAAGGAACATCTCGTGAATCATATGCGTTGCCATACTGGTGAACGTCCATTCGTGTGCACAGAATGTGGCAAGAGTTTCCCACTGAAGGGCAATCTTCTCTTTCATATGCGCTCGCACAACAAGGGCAGTAATGCCGAAAGACCATTTCGCTGCGATCTGTGCCCTAAAGATTTCATGTGCAAAGGACACTTGGTCTCGCATCGGCGTTCGCATTCAGACGAGCGACCGCATAGTTGTCCGGATTGTGGGAAGACCTTTGTTGAGAAGGGCAATATGCTGCGACATTTGCGCAAGCACGCGGCTGAAGGCCCGCCGACACAAGTTAGCACACCATCGGCTATACCACAATCCGGTGTACTACCGATACCGGCAGCGGCGGCAGTTCTAGTCGGGCATCCTTTAGCACCGCCGGCACCGCCTGTGGTACCGCAACACACGGTGGTTGTGCCGACACCACCCGGTGTATTAACATCATATTAG
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATASLGNVGSTPHSSADLRVGTAVALASSVASSVAKYWVLTNLFSPGPLPQVSVYHHSHHNSSHRSGGGGETSSSKEPASSLNQEMALTSSSHHQQQSTAAHHHQPSVSSSSSHHSSLQSNPQIPVSLPGLNLDGAHLPASVSHLAAHAQMQQMQAQAQQQLHQQQQQQPPQQQQQQQQQSHHQIPNHQNAQNNGPTAHGQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQQQQQQIGVNISGNSTTEGGNQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00014883;
80% Identity: -