Acoo001095.1
Basic Information
- Insect
- Atta colombica
- Gene Symbol
- -
- Assembly
- GCA_001594045.1
- Location
- NW:202011-210752[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.5e-13 4.9e-10 38.1 0.7 7 39 263 294 259 298 0.93
Sequence Information
- Coding Sequence
- ATGTTATGCTCGCGACACTCGAAAAGCGCCGTATCGCTAGATGGATCATCCCGAGGACGTCTTCGAGGAAAATCCATTCCCGACTTGCTCAAGGCATGCGCTTCGATGTATAGAGACTATCTTGGTTGCGTTCAACGCTTGTTATCTCGTGACCGTTCAACTCTAGACTCTAAATGGGATTTCACGGGTTCGCACCATCCCGTTAGCGGGGATGAGACCCGATCCTCTCGCGGTCTTCGTGATCGCACTCTAATAGACGCTTCTCTTTTCAGATGCGCCCCTCTTTCCAATTGTGAGGCCACGGCTGCATGTGTGTCCCCGCTGCGGCCAGATGTACTCGTGGGCATCAAACCTGCGGAAACATCTCAAGATGGGCTGCGGCATGATCCGCTTGTTGTCTGGGTCGAGGATTATCAAGCATTCGATACGAACACGACCAGCTCGATCGATCATCAATCCAGCGATGATCATACTTACGTTGATCGTTTGCGATTCAGGCAAGTCACTAGTAGATTCAAGTGTTCCAAGTGCGCGAAGTCATATCGATGGAAACATCATCTTGTGGAGCACATTAAAGCTTCTTGCGGCCAGGAGAAGGCGGAATGCTGTCCCTACTGCAGTTACAAGAGCAATCGCAAGTGGAATCTGAAATCGCACATGAAGAGGATTCATGCGAGAGAATATAAAGAGGAAATAAAGAGCAAGTGTGGACCATTCATTTACGAGACTCCTTTACAAAGTGCGGCGAAATCACGAATATTTATACGCGATTTGGAACAGGCGAGGAGAGCCGTTAACGCTGTCGCCAATGGAATGTCTTTGAGGAAGGCCGCGAAAATGTACTCCATATCCAAATCAGTTCTACATCGATACAGCAAACGGGATGCGCGCTCGGTGGGTTATCTGAATTGTCAGAGGGTGACGTACCCCTGCAGGAATTGCGGCAAAGTCTACAGCTACTACTCCAGCTTGGCTAGGCATTTGAAGCATGAGTGCGGCGTAGAACCCAAATTCCACTGCCCCTTGTGCCCTTACAGAACGAAACACAAGTCAAGCTTAAACACTCATCTGAACGGCAGGCATATGAAGTTATTAAGCGAGTTTTATACTGTGCCCAATGGCAACAAGACGTCTTCAACGGATGCTGGGAATTGA
- Protein Sequence
- MLCSRHSKSAVSLDGSSRGRLRGKSIPDLLKACASMYRDYLGCVQRLLSRDRSTLDSKWDFTGSHHPVSGDETRSSRGLRDRTLIDASLFRCAPLSNCEATAACVSPLRPDVLVGIKPAETSQDGLRHDPLVVWVEDYQAFDTNTTSSIDHQSSDDHTYVDRLRFRQVTSRFKCSKCAKSYRWKHHLVEHIKASCGQEKAECCPYCSYKSNRKWNLKSHMKRIHAREYKEEIKSKCGPFIYETPLQSAAKSRIFIRDLEQARRAVNAVANGMSLRKAAKMYSISKSVLHRYSKRDARSVGYLNCQRVTYPCRNCGKVYSYYSSLARHLKHECGVEPKFHCPLCPYRTKHKSSLNTHLNGRHMKLLSEFYTVPNGNKTSSTDAGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00015006;
- 90% Identity
- iTF_00015006;
- 80% Identity
- iTF_00182250;