Acoo000206.1
Basic Information
- Insect
- Atta colombica
- Gene Symbol
- ARID5B
- Assembly
- GCA_001594045.1
- Location
- NW:1827184-2011105[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-16 9.1e-13 47.6 0.0 21 89 344 410 332 410 0.88 2 2 3.7 5.3e+03 -2.9 0.1 6 33 769 797 764 798 0.82
Sequence Information
- Coding Sequence
- ATGGGACAGCGGCGTGCGCCGCACCGTGAGTCGCTGGTCCGAGCGTGTCAAACTTGTATCGTTTTGATATACGCACACCGCGTTCTCTTGCTAGGCGGTGCTTGCTTCAGCCACGGCCCTTACACATTTTACAAGGCAGTAAGGATAAGTAACGGTCGTGTCCTTCGTCTCGGTAGTTTCTTCCTGACGAAATTGTGGAGCGATGCCGATCTCGTCAGCATCGGCGAACTTCAGCTACTGTGGATGGACAGTCGTGGACCGAATCAGCCTTTGGCGTCTTTGCGACTTTATTTCTTACCTGAAAACACGCCGGATGGAAGGAGGGACACGCACGGAGAGgaCGAGGTGCTGACGATTTCAGAAAAAGTAGTCGTCCGCGTGCACGACCTAGTCACATGGCTTTCACCTACGTTAGAATGGTCGTGGGGACGGGAAGTGTCCTATCCAACGACCCCGACGTCGTCCCCGGAGACTAGTCCACTTAGATACGAGATGCCGCAGCCACAGGTGCTGACGGATCCGGGGATCGATTTCTCGGACGTCGAGAAACAGCAGAAGGAATACGAAAGCAATCTGAATTCTTTGAAAAGATCGGACAGCTTCCAAACGAAGGTGGTGGTACTCTCATATCCTAGATATTGCCGCTATAGGGCACTTCTACGTAGACTCGAAGGTGCCGAGCCTTCCTGGCTGTGCTCGTCCATCGCGGCCGCGTTAGGGGGTTTCACCGCGACACCAGGCACCAAGGTGCTCTTCTGCAGAGACACATTTGACTATCCGGATCTCGAGACTCATGAGCTGCTGTGTAATCACTTGGCGCCGAAATTAAAAGGTAGACCACGAAGAAAACGTAAAAAGCGCAGCGCTTCGCCGGGCGAATCCTCGAACGAGAGCGAAGCTTCAGTGGCGTCGACGTCGAAGAGTACGTCGGCGATCACCAGTCTGGTGATACCCACGGTCGGAAGACCGCCCTTGTCCGGGATACGGCGGAGCGAAAGGAAGACCAGCgcggaagaaaagaaattcatcACCGACGTGCAGAGTTTTATGAACTCTCGGGTCGATCTGTTCCTGTTCTATACAAAAGTGCAAATGCTTGGTGGTTATGACTCCGTCAGTGCTGGGCGTCTTTGGAAGACCATATACGATGACATCGGTGGTAACACGGGTTCTACTAGCGCAGCGACTATTACACGTAGACACTACGAAAGATTATTATTACCTTACGAAAGGTATCAGCGAGGCGAAGAAACAAAAGTGAGACTGAACCTCGGACGACGTACCAAGAGTATGAGTGCATCCGAAGATTTAGACATCAAGGAGGAATCGAGCGAGCTCTATATGTCGGAGACACCTCCACCAATAGATGTAATTCCTGCGACCACAACATCACCCTTACAACCAATAATGTCAGCAACAACAACGACTTTACTCTTGAGTGAGAAACCCAAAGCCGAAACTGGCAAGACATCCTCGTTACGTAGCGTGCGAGTGAAGCCGGAACGCCTGAAATCTTTGAATACAATAATCGCCAATAATGCGACACCTTCCAGCCAGCAAGCTAGCCAACTGCCAAGTCCACCGCCATCCTCCAATACATCTATCTCGACGCCCAATAGCACACCCTCCACAACACCGACGAATGGTACCAGTAACAATCAGAGTGTCTTGGAGAGGCAGCTCAACAGTCCTTTGATATCCCAACAAGTTCCACCATCGTGTTCGCCACCAGGCTTGCCTGTGACTAGTGTAGCGGCAAACGTGTCGACGGTTGTCACTCTAACGCCTCCACCTGAGAAGGATATGAAGGAGATCAAGTTGGATCCCAAGCAAACAACTTTGCTGGCACAAGGCAAGGAAAATATACCACTATTCGGCGGCGAGAAATTCGCGGAAAAGACGATAATGCCACCAGTCTCCAGATCACCTGAAGTGATTGACCTTGAAAATGAGAATGACACGAGTCGAGACAAAATAATCATTCCCAGCTTTAAGAAACGTAAACTCGAGATTTTGCGTGAAGGCGGTCTCGAAGTTACCGCCGTCGATCTGGACGTGCGACCGAGCGTAATTCAAAGCTGTGTTGGTATGTCGCCGCAACAACATCAACAGCAGCAATCGCCATCATCCTTGCCTGCTACAATGAAGTCTACTGAAGAGAAGCAACCATCGATCTCGCCGTATCCACTTCCAGTTACGCCCAACTCCATTCCTAAATTGATATCCGTCACTGTGACACCCGACATAGGACATATGTTACCGTCGCCGCATGAGCATCAAAATCATCCGCCGCGAATACCAACGATTAAACAATTACCAGTTCAtcacaacaataataatattagcatgatgaataacaataatatgataaacagTCGAATAATAAATCTCGGTAGCTCGAACAATACCGCGCTATTGCAACTGTATGCGAATGCGAACGTCGTACCATCAACCATTTCGTCTGTGCAACAATCAAGCCATCGTTTCGTTCCACCAAATATTCCAAATGGCAGGTTATTACTACCAAAGGTGACACAATCAAGGTCAATATTTATGCACAATGAAAGGACAGTTTATGGAAATCCCAAAGATATTTTGAACTCTCCTCCAAAATATCACTCGCCGCATCCGCAtcaacaacagcagcaacaacgCTCGCAGCAACATTCACAAATGAGCTCCAGCAACGACATCGGACAAGGAGGTGTTCTCGATCTGACGCAAAAGAACGAGAAACCGACGTTCCCTAGGCCCAGTCTAGAAATAGTCAGAGTACCTGTAGTGCAGAGGCCTAATCCATTAAATCTGGACGTGCGGAATTCACCCGTAGCTAAGGACAAATTGTCGGAGAGATCTGTCGTCGACTGTCCAAAGCGAATACCTTTCCCTGCCTACCAAAATGTAATTGACAGTCGAACTATCGCGTCGAATAACCTCGAGATTACGCTAGTGAATCCCAAGCACAAAAACAATCATCACGTCATACCGTCTCATGTTCAAATACCGAGTCCACCTAATAAAAATGCGATAGGAACGATAAGTAGCGTGCAAATGAGACAGCAACAATCGCAGCAACAAGTGAACGGAAAGTATACGGTGAGAAATGAGCCTATTTCGCCGTACACACCAAGGAAGCCAAGTCATCCCATCATACCAAACGTACCCAATCTGAATCATTTGAATCATAGTGGAAGTTCATTTCCTAGAATTCAGGCAACGACATTGCAACCACAACAACAAATGAGCATTGATAGAAGGAAAGCGGCTGCGGAGGCCGGTAGGGATCATCAACATCGTAGGATTAGTGAAGGCGAGAAATCATCATCTTTGGCAgcgcaacagcagcagcagcagcagcaacatcatcatcatcatcatcaggAATCCAGGCAAAACGAGGCTGTGCGGCGACACAGTCTATCCAGCATACCATCGGGATTCGTACCGACGGTACCGCAAAATAATTCTGCTCCCTTTCCTCTGCCACAATTGCCAAACGCGTCCGGCAAGTTCCTACCAATTCTGGACCCCATGTACTACTCCACGTTCTATAACGGTTTGTTCCCACCGCCGATTCCGCCCACGGCCACCGCAACTGCTGCCACCGCGTCGTCGTTTTTACCGCCGGAATTTAACGCATATTACAAGGAATTACTTGCTTCCTCGCAACCAAGACTGACGGGGATGACGGGGCAGTCGCCGCATCAACAGCCGGCCGCTCCAACGTCTAAATAG
- Protein Sequence
- MGQRRAPHRESLVRACQTCIVLIYAHRVLLLGGACFSHGPYTFYKAVRISNGRVLRLGSFFLTKLWSDADLVSIGELQLLWMDSRGPNQPLASLRLYFLPENTPDGRRDTHGEDEVLTISEKVVVRVHDLVTWLSPTLEWSWGREVSYPTTPTSSPETSPLRYEMPQPQVLTDPGIDFSDVEKQQKEYESNLNSLKRSDSFQTKVVVLSYPRYCRYRALLRRLEGAEPSWLCSSIAAALGGFTATPGTKVLFCRDTFDYPDLETHELLCNHLAPKLKGRPRRKRKKRSASPGESSNESEASVASTSKSTSAITSLVIPTVGRPPLSGIRRSERKTSAEEKKFITDVQSFMNSRVDLFLFYTKVQMLGGYDSVSAGRLWKTIYDDIGGNTGSTSAATITRRHYERLLLPYERYQRGEETKVRLNLGRRTKSMSASEDLDIKEESSELYMSETPPPIDVIPATTTSPLQPIMSATTTTLLLSEKPKAETGKTSSLRSVRVKPERLKSLNTIIANNATPSSQQASQLPSPPPSSNTSISTPNSTPSTTPTNGTSNNQSVLERQLNSPLISQQVPPSCSPPGLPVTSVAANVSTVVTLTPPPEKDMKEIKLDPKQTTLLAQGKENIPLFGGEKFAEKTIMPPVSRSPEVIDLENENDTSRDKIIIPSFKKRKLEILREGGLEVTAVDLDVRPSVIQSCVGMSPQQHQQQQSPSSLPATMKSTEEKQPSISPYPLPVTPNSIPKLISVTVTPDIGHMLPSPHEHQNHPPRIPTIKQLPVHHNNNNISMMNNNNMINSRIINLGSSNNTALLQLYANANVVPSTISSVQQSSHRFVPPNIPNGRLLLPKVTQSRSIFMHNERTVYGNPKDILNSPPKYHSPHPHQQQQQQRSQQHSQMSSSNDIGQGGVLDLTQKNEKPTFPRPSLEIVRVPVVQRPNPLNLDVRNSPVAKDKLSERSVVDCPKRIPFPAYQNVIDSRTIASNNLEITLVNPKHKNNHHVIPSHVQIPSPPNKNAIGTISSVQMRQQQSQQQVNGKYTVRNEPISPYTPRKPSHPIIPNVPNLNHLNHSGSSFPRIQATTLQPQQQMSIDRRKAAAEAGRDHQHRRISEGEKSSSLAAQQQQQQQQHHHHHHQESRQNEAVRRHSLSSIPSGFVPTVPQNNSAPFPLPQLPNASGKFLPILDPMYYSTFYNGLFPPPIPPTATATAATASSFLPPEFNAYYKELLASSQPRLTGMTGQSPHQQPAAPTSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01254583;
- 90% Identity
- iTF_00417350;
- 80% Identity
- -