Acep005678.1
Basic Information
- Insect
- Atta cephalotes
- Gene Symbol
- -
- Assembly
- GCA_000143395.2
- Location
- NW:913311-915917[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.2 1.8e+02 2.1 0.3 1 8 107 114 107 116 0.91 2 14 0.59 34 4.4 0.2 2 23 318 339 317 339 0.94 3 14 0.0016 0.094 12.4 1.4 1 23 347 370 347 370 0.95 4 14 0.00026 0.015 14.9 1.1 1 22 376 397 376 397 0.94 5 14 0.46 27 4.7 8.0 1 23 459 481 459 481 0.95 6 14 0.0013 0.076 12.7 0.4 1 23 488 511 488 511 0.92 7 14 5.6e-05 0.0032 17.1 2.1 1 23 517 539 517 539 0.97 8 14 0.093 5.4 6.9 5.6 1 23 545 567 545 567 0.97 9 14 0.00064 0.037 13.7 1.1 1 23 572 594 572 594 0.96 10 14 0.024 1.4 8.8 0.1 1 23 607 630 607 630 0.94 11 14 0.0001 0.0058 16.2 3.2 1 23 646 669 646 669 0.96 12 14 0.00066 0.038 13.7 0.7 1 23 678 701 678 701 0.97 13 14 0.00022 0.013 15.2 2.2 2 23 705 726 704 726 0.96 14 14 0.00027 0.016 14.9 1.0 1 23 756 779 756 779 0.98
Sequence Information
- Coding Sequence
- atgtcTAAAATGGAATGTGATATATGCCGTCTATGTGgtattaaatttgagtttgaacatttgaaatatatctttgatGAAGTAACTAATTTGACACAGATAATAAATGAGACTTTACCAATTAAGgtTTCACAAGATGatcatttcaaatatatatgtttagactgttatgataaagttatcaatcattataattttattcaaaatatattagtatactCGAAGGAATGTGAGACAAGAACTGTCTCTTTCTTTGAAgtcaataaaaatgagaaattggAGGATGTGGTGATTTCTAAATTACATAGTGACATGATATATCCCTGTCCAAATtgcaataaagatttaataatcttaataaacaACAATCCTTCAGATAGTAATCATACATTTCATGCTTCATTGGCTCTTGTAAATCAAATAGAACAATCGCAAGAGAATAATCAAATATCTGATAATGCAGAAGAGTTTAATGTTTGTACATCGAAATCAAGGAcacaagataaattatatgaattatcatTGTATCATGATAttatcaatgaaaataaaacaaatgataataaatgcgATATCAAAAGGAAACATGGTAGCTTGCAAAAAATTGATGTATCATGTAAACTGAAAACTGGTGTAAAGAGAAAGATTCAACAAAGTACTTCTACGAAAACCTTTATTAATCCTACTAAGATGCAGAAATTAGAAGCAAAATTAGATACAATGGAACGAAGTTTTAATGAATTAGACagtgattataataaattaaatgtaactgACTTAATAACATTTCAATCTGTAAACAATGATGTAGAATGTCTTggtgaagaaataaaaaataaacaggaATCTAGAATTGAACACAACATAATGGTCGTGACCAAAATGGAAGAAGAATATGTCAATGAGAATGATACAAAtgacattaatatttcaaaaaataatgtaaaacaaGAATGCAATTTGTGTGGAGCtcgttatattttacaagaaaaatatgagTTTCACATGGAGAgacacaaattaaataaaatagataaatatgttTGTACAAAATGCGATAAAGAaactaaaaatgaaaacttgTTGTGGGATCACTACCTTCACATGCATAAAAGCTCAATACAATATCTTTgcttgaaatgtaaaaaagtattCATGAAAAAGGCACACTTAATTGCGCATCAAAAAACGTGCAAATTCTCTGATAACGAAACAATGccaaatattaaaacagatGTGGATAACAATCAGAAGATTACTACAAGACCGAGGCGAAAATGCAAAGTCTGCAGAAAATTGATCAGAGATCCTAATGCTATTAACGATGAAGCAATGTGCGCCTCTTGTAAAATAAGAGGAATTTCTCAGCGACAATATTACTGTTCAAAATGTCATAAACATTTTATGCGTCAGGAGAGACTCGAGTTCCACAAAATGCGACATAATGAGAATATGGACGAGTTTATCTGCAGCACATGCGGTAAGGAATTCAGTGGGGAAAATTCATTGTACGAACATTATCTCTTTGTGCATAAGGGATTTAGACCACATATTTGCGAAATATGCGGCAAGTCATTTCAGCTGAAGGTGCGATTGAAGGAACATCAACGAAAACATACTGGTGAGATGCCTTATCAATGTGAAGTATGTGGCTTGCGATGTAGGACTACACATGCATTAAAATTCCACAAGAAGTCTCATGTCTCTAATCGCCACATTTGCGAGATATGTGGCAAATCGTTCCTTAAGAAGCAAAATTGGAATGAACATCTGGAGAGACACTggaaaaaagataagaatgTATTACTTCCACGAATATTTACGTGTCCTGTGTGCAACGATAATTTGCCGACCTATCGTATGTTAAAGAATCACATGATTGGAATTCATGAACTTGACCGTCAAGATCCTTTAATAATGGATCAAAAACCATTGTACGAATGCAACGAGTGTCAAGAGAAATTCAAGCATCAAATGTCGCTCAAGTCACACAAGGAAAAGGTGCATGAAGGCAAAATTGTACCTCTTACATTTCAGTGTGATATAtgcaaaaatgtatacaaagcCAAACGATTCCTAATAAGGCATATTCAGAGTGAGCACAATGACAATAAATGTCAGCAGTGTGATGAAACATTCACAGATAAAAAAGATCTTGACCATCACGTTTCACTACACAATAGTAAGAAACTGTTCGCATGCGAGTACTCTGATAAACAAAGGGATGCTAGGAACTTACATCATCAAGAACACACGATCATTTTTTACCAATGTGGAGATTGCAACGAGTCATTCGATAGCTATGCTAATCGCTTAAATCATCGCAAAAAGATGCACAAACCCGAGTGA
- Protein Sequence
- MSKMECDICRLCGIKFEFEHLKYIFDEVTNLTQIINETLPIKVSQDDHFKYICLDCYDKVINHYNFIQNILVYSKECETRTVSFFEVNKNEKLEDVVISKLHSDMIYPCPNCNKDLIILINNNPSDSNHTFHASLALVNQIEQSQENNQISDNAEEFNVCTSKSRTQDKLYELSLYHDIINENKTNDNKCDIKRKHGSLQKIDVSCKLKTGVKRKIQQSTSTKTFINPTKMQKLEAKLDTMERSFNELDSDYNKLNVTDLITFQSVNNDVECLGEEIKNKQESRIEHNIMVVTKMEEEYVNENDTNDINISKNNVKQECNLCGARYILQEKYEFHMERHKLNKIDKYVCTKCDKETKNENLLWDHYLHMHKSSIQYLCLKCKKVFMKKAHLIAHQKTCKFSDNETMPNIKTDVDNNQKITTRPRRKCKVCRKLIRDPNAINDEAMCASCKIRGISQRQYYCSKCHKHFMRQERLEFHKMRHNENMDEFICSTCGKEFSGENSLYEHYLFVHKGFRPHICEICGKSFQLKVRLKEHQRKHTGEMPYQCEVCGLRCRTTHALKFHKKSHVSNRHICEICGKSFLKKQNWNEHLERHWKKDKNVLLPRIFTCPVCNDNLPTYRMLKNHMIGIHELDRQDPLIMDQKPLYECNECQEKFKHQMSLKSHKEKVHEGKIVPLTFQCDICKNVYKAKRFLIRHIQSEHNDNKCQQCDETFTDKKDLDHHVSLHNSKKLFACEYSDKQRDARNLHHQEHTIIFYQCGDCNESFDSYANRLNHRKKMHKPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00182202;
- 90% Identity
- -
- 80% Identity
- -