Basic Information

Insect: Atta cephalotes
Gene Symbol: salm
Assembly: GCA_000143395.2
Location: NW:1555825-1578614[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.8e-05 0.001 18.6 1.0 1 23 376 398 376 398 0.98

2 9 7.3e-06 0.00042 19.8 2.1 1 23 404 426 404 426 0.98

3 9 3.3 1.9e+02 2.0 3.3 3 23 789 809 788 809 0.92

4 9 3.2e-08 1.8e-06 27.3 0.6 1 23 815 837 815 837 0.97

5 9 5.1e-05 0.0029 17.2 3.5 1 23 847 869 847 869 0.98

6 9 0.009 0.52 10.1 3.2 2 23 1163 1184 1162 1184 0.97

7 9 0.026 1.5 8.6 1.0 1 14 1190 1203 1190 1204 0.92

8 9 4.2e-07 2.4e-05 23.7 2.1 3 23 1427 1447 1425 1447 0.96

9 9 1.5e-07 8.4e-06 25.2 0.9 1 23 1453 1475 1453 1475 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.8e-05	0.001	18.6	1.0	1	23	376	398	376	398	0.98
2	9	7.3e-06	0.00042	19.8	2.1	1	23	404	426	404	426	0.98
3	9	3.3	1.9e+02	2.0	3.3	3	23	789	809	788	809	0.92
4	9	3.2e-08	1.8e-06	27.3	0.6	1	23	815	837	815	837	0.97
5	9	5.1e-05	0.0029	17.2	3.5	1	23	847	869	847	869	0.98
6	9	0.009	0.52	10.1	3.2	2	23	1163	1184	1162	1184	0.97
7	9	0.026	1.5	8.6	1.0	1	14	1190	1203	1190	1204	0.92
8	9	4.2e-07	2.4e-05	23.7	2.1	3	23	1427	1447	1425	1447	0.96
9	9	1.5e-07	8.4e-06	25.2	0.9	1	23	1453	1475	1453	1475	0.98

Sequence Information

Coding Sequence: ATGAACGAGCAAGAAGAAgatgatatcattaaatacataaaaagatgtataaCGGATCCTTTAAAGCTACGCACTCAGAGATCGAAGAAAACTTTCTACATGTTACGACATCAACAAACATCTAgAGAAGAAAATGACTTTACATCAGATGGTGAAGAGAGTGGTGGTGGTGGAGGAGGTGGCGAGGAAGCCGTGGATCTCACAGCGACGAGATCTCATCAGGGCGATGATGATCCTATGGAAGAGGATGAGGAAGAAGGTATTGATGAACAAGACGAGCAGGATGAAGATGAGGAGGGCTCTCGCAAACAGATTCATCATCGACAAGACGCGgagaacaataataattttgtggaGAGCGGCTTACCTACCGCTATATTCCCACCAGCTGGAACTAGTCACGTCACCCTCGAAGCCCTTCAGAATACAAAAGTGGCGGTCGCTCAGTTCGCTGCCACTGCTCTTACTGGGGCAGATAGCGAAGCGGCGCTACAAGACCTGGCATTTCTGGAAAATACACTGTGCACCCTTCAGAATCAACAGGTATTACAATTACAGCTGATTCGACAACTTCAGCAGCAATTATTGATCACTCACGGGCAATCGGTAATGCAATCGTCGACGGAACCAACCGATAACAAAGAGGCTTCGTCGTCTCCTATTATTCATCCGAAACCATTGTCGAGTCTCGCGTCACCTCCTTCTTCTCGTCCACCAAGTCATCATCAGCAAACATCACCGGCGCCGCTGACACCGAATCTACTTCAGGAACGACCCACTTCGACGAGCAGCGCCTCTCCTTTGAATCTACCCTTATCTTCGTCCAGCACGACATCAACTGTCATTACGACCACCAGCAACCAGATGCCGATGCCACATCAAATACCACATTGCTCGATAAGCGCTTCTCTCGCTTCATCGATCATAACGAATACCGATCCGCCTCCACTTCACGAGCCAAATACTCTGGATATTCTTCAAAAACGTACCCAGGAAGTATTGGATAATGCGAGTCAAGGACTAGCTAACAATTTGGCCGACGAGCTCGCGTTTAGAGGCAAGGGCTCGCGACTATCTCCTTATGATTCGAAATCAAGCGGTGGTCGCGGCGAGCCCTTCTTCAAGCATCGATGTCGCTTCTGTGGCAAAGTCTTCGGTAGCGACTCGGCGCTACAAATCCACATACGATCCCACACAGGTGAGCGACCTTTTAAGTGCAACGTATGTGGCAGTCGATTTACGACCAAGGGCAACCTGAAGGTCCACTTCCAAAGGCACACGGCCAAATTTCCACATGTTAAGATGAATCCGAATCCTGTTCCAGaacatttagataaatatcacCCACCCCTCTTGCAGCAAATTGCTTCCGGGAGACCGATGCCGTctccgccgccgccaccaccaccaccaccaccatccTCTCATCACCCCTCGTTTCATCCGACAACAACGCACGGTTTCCTCCCACCACAACCCATACCTCTCACCTTATCCAATATGACGCCCCTTTATCGATCTCCAATTATTAATCATCGGGATGATCAAGATGTACCAGAGAACCTTAGTAAACCTATAACCACCGCTCCACAGACATCTCCCACTTCTCCCGTTGCCGTATTGAATTCTCGTCATTCCTTTCATGACAATCTCCATCAACAACATCAAAAGCAGCAGCTTGAACAGAGAGAAGAGATAAAACTCGAACAGAGATCACCCGGACAGGAGCAGTATCAACGACCGATGAGTCGGGAAGGCGCTGAGCGAATAACACCGAAGAGAGAACCTGAGGAAGCGGAAGAAGCTGCAGAGGAAGAGAGCGAAGATTTTGAGGACACCACAAGACGATACCTTAATTCACCTCAATCTGCGAATCCACCGTCCCAACCGCAAACGTACGAGGATTGTAGTATGGATAGCAAAATCAGTGGACGTTTAGAGGGCGACGGAGAGATGGAAGTGGACGAGGAAATAGAAGAGCAGCCTGAAAACCTCTCAGGCAGAGGTACAATTAATCGTTTGCCTCAACAGATCGTGACGTACCCAGGAGCATCACCAGCCAGCAGTAGCGCGAGTAGCGGTAGTCTACAGACATCTTTCGCTGGAATTCTGTTTCCAGGTCCTCCGGCTCATCATCAAATTCCTCATCTTCCTGTTTCTACACAGACAGGACCAACCATGGCATCCGGAAATGAAATGATCGATCCAGCCAAGGATCCAGCGATTTATTCGACTTTACTACCACGGCCAGGTAGCAATGATAATTCCTGGGAGAGCTTGattgaaataacaaaaacttCAGAGACGTCCAAGCTACAGCAACTAGTCGACAATATCGAGCATAAACTGAGCGATCCTAATCAGTGCATCGTTTGCCACAGAGTGCTCTCATGCAAGAGCGCGTTACTGATGCATTATCGCACTCACACTGGCGAACGTCCTTTCAAGTGTAAAATTTGCGGTCGTGCTTTCACGACGAAGGGCAATCTGAAAACCCACATGGGAGTGCACAGAGCTAAACCACCACTGAGAGTGTTGCATCAGTGTCCTGTATGTCACAAGAAATTTACGAACTCTCTCGTATTGCAGCAACACATACGTCTTCATACCGGAGAACCCACTGATCTCAGTCCGGAACAGATTCAGGCTGCAGAAGTAAATGAGTTCCCACCCGGTTACCATCCATTGGCATCTTTTCTCCCTCAAGGCTTTCCACCGATACATCCGACCAGTACAGGCTTCTCCTTAGGATTCCCTCCATCCAGGCAAACGGCTATCGAACAACAATTACAGGAGAGCGACGTCGAAACGAAAGAGGAATCTCAGCACCAACGACAGAGATTTATGGAGGAGCATAGCGAAGAGATGGAAGATCAAGAAGACGAAGAACAAGATCACAGAGAGGACGATGAGAGGTGCGAATTGAATCGTGATAGGCGTAGCGTCGAAATTGAAGAGGAGCAGGATCATGAAAGCGAAGATACAACCGAACACAAGGACGTAACGCTTCCTATATTTTCGACTTCGTTGGCAGCACTCGAGAACCAAGTAAGGACTATCACGACGACAGCCACGACTATGAATGTAGCTAGATCGCCGTCCTTTCATCGATACAACGGTAGCGAGAAGAGCACTAGCCCACTAACATCCGGAGCTCCGCTCGACTTGACGCCCCGTGCTTCGTCCACGCCAGCGTCAGTGGCTTCAGCATCGCCCACACCACCACCCCAAACCACGCCGCATCATCCACCAAATCCTTTCGGCATGTTCGCGGGACTGCTACAAGCGGTTTCGTCCACTCCTGCTACTAGCACGATAGGCACTTCGAACATAAACAGCGTCACGTCGATGAATGCCGTGAACCCGGGAAGTGGGCCCGGCACTGGACCACTAGCCTCGCTGACCACTTCAGCTGTATTAGCCGCATCATCGACCTACAATCCGCTTGGCCTAGCTGTTGGAGGCCCAGCAGTACGTGGCAACACCACATGTAAATTCTGCTACAAGACGTTCGCGTGCCAATCTGCATTGGAGATTCATTACCGGAGTCATACGAAGGAGCGACCTTTCAAATGCAGCATATGCGATCGAGGTTTTTCTACGaagAACGATGATTCCGGTCAGCAAGTATGTTCCTGCGCGGATCAACCCTTCGCCGCGAAGGGTCCGATTCTCCCACAACCCAATTCCCAATATCGCTCGTACCCGGCGAAATCGGCCGCCGGAAATAGTGAGAAACCGAAACGCAGGCGGCGGCGGCCTGAGGAACGGAAGAACCGGGGGCGGACAGGAACAGGAGGGGGGCGAAGGCTGACGTCTGTTTATCCTGCCGTCCGCCTGCCCCCGCTGATGCCACCCGCCCTCGGACTTCTACCCTCGGACCACGTCTTCCTGGGTAATATGAAGCAGCATATGTTGACTCACAAGATTCGCGATATGCCGCCACATCTGTTCAGCGATCCAAAGCatcaacagcagcagcaacagcagcaacaacaacaacagcagcagcagcagcagcagcagcagcagcagcaccAGCAGCAGCAGCTgcaacaacaacagcaacaacaacaacagcagcagcagcaagaACAAGAGACTTCCAGAAGTCCAATGTGCATTGATGATTCGAGCCTACCGCCCCCACCTCCACCACCTCCACCACCCCCGCCGATGCCACCGACGTCCATCGAATCCACAATACCGGTGAAAAGATCGCCGGAAGGAGATCTGCCAGCACCGAAAAGACCAGCCAGCCTGCCGAGCAAGCATTTGTGCCAGATTTGCAATAAGAATTTCTCCTCGTCTTCGGCGCTCCAGATCCATATGAGAACTCACACTGGTGACAAACCATTCCGATGCACTGTCTGCCAGAAGGCGTTCACCACCAAAGGCAACCTCAAGGTGCACATGGGTACTCACATGTTTACCAACGGAACGTCACGCCGAGGTCGACGGATGTCATTGGATATACCTCCCCTGCCAATCACGCCCAAGGACTCGGAATTTCTGCAAAGACGACCGGACCTTTTTTACCCGTATCTTCCCGCGCCATTCCTTAACGGCGTCCAGCAGAAGCTGAACGAGATTTCGGTGATTCAAAGTAGCAACGGGTTACCACCCCATTCCTTGAGCGCGGGCAAATACGCGGCAAGTCTATTTGGCTCGGTGTATGGTGCCGGCGGAGGTGGCTTCTCCTTGGATAAACCAATGGGGCCAACAAACGGACCTCTAGTGGATGGCAAGTCCGCGATACCTTCGGGATCCATGCTCTTCCAAACACCATCGCCCTCGCATTCACCTGGCGCGTCATCCAATGGTGGTAATCAGACGTCCGCTAGCGTGTCTTGGACCGGCGATACTCTTCAGCACCATTTCGATCGAGAAACACCGAGCAGAACCGAGAATGATGCCACACCGCCCACAGCACGGTTACCACCGCCACCAGCGAGAGGAGAGGGATTAGCTGCGTGA
Protein Sequence: MNEQEEDDIIKYIKRCITDPLKLRTQRSKKTFYMLRHQQTSREENDFTSDGEESGGGGGGGEEAVDLTATRSHQGDDDPMEEDEEEGIDEQDEQDEDEEGSRKQIHHRQDAENNNNFVESGLPTAIFPPAGTSHVTLEALQNTKVAVAQFAATALTGADSEAALQDLAFLENTLCTLQNQQVLQLQLIRQLQQQLLITHGQSVMQSSTEPTDNKEASSSPIIHPKPLSSLASPPSSRPPSHHQQTSPAPLTPNLLQERPTSTSSASPLNLPLSSSSTTSTVITTTSNQMPMPHQIPHCSISASLASSIITNTDPPPLHEPNTLDILQKRTQEVLDNASQGLANNLADELAFRGKGSRLSPYDSKSSGGRGEPFFKHRCRFCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQIASGRPMPSPPPPPPPPPPSSHHPSFHPTTTHGFLPPQPIPLTLSNMTPLYRSPIINHRDDQDVPENLSKPITTAPQTSPTSPVAVLNSRHSFHDNLHQQHQKQQLEQREEIKLEQRSPGQEQYQRPMSREGAERITPKREPEEAEEAAEEESEDFEDTTRRYLNSPQSANPPSQPQTYEDCSMDSKISGRLEGDGEMEVDEEIEEQPENLSGRGTINRLPQQIVTYPGASPASSSASSGSLQTSFAGILFPGPPAHHQIPHLPVSTQTGPTMASGNEMIDPAKDPAIYSTLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLSDPNQCIVCHRVLSCKSALLMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNSLVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPGYHPLASFLPQGFPPIHPTSTGFSLGFPPSRQTAIEQQLQESDVETKEESQHQRQRFMEEHSEEMEDQEDEEQDHREDDERCELNRDRRSVEIEEEQDHESEDTTEHKDVTLPIFSTSLAALENQVRTITTTATTMNVARSPSFHRYNGSEKSTSPLTSGAPLDLTPRASSTPASVASASPTPPPQTTPHHPPNPFGMFAGLLQAVSSTPATSTIGTSNINSVTSMNAVNPGSGPGTGPLASLTTSAVLAASSTYNPLGLAVGGPAVRGNTTCKFCYKTFACQSALEIHYRSHTKERPFKCSICDRGFSTKNDDSGQQVCSCADQPFAAKGPILPQPNSQYRSYPAKSAAGNSEKPKRRRRRPEERKNRGRTGTGGGRRLTSVYPAVRLPPLMPPALGLLPSDHVFLGNMKQHMLTHKIRDMPPHLFSDPKHQQQQQQQQQQQQQQQQQQQQQQHQQQQLQQQQQQQQQQQQQEQETSRSPMCIDDSSLPPPPPPPPPPPPMPPTSIESTIPVKRSPEGDLPAPKRPASLPSKHLCQICNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMFTNGTSRRGRRMSLDIPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQSSNGLPPHSLSAGKYAASLFGSVYGAGGGGFSLDKPMGPTNGPLVDGKSAIPSGSMLFQTPSPSHSPGASSNGGNQTSASVSWTGDTLQHHFDRETPSRTENDATPPTARLPPPPARGEGLAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417805;
90% Identity: iTF_01421750;
80% Identity: -