Basic Information

Insect: Atta cephalotes
Gene Symbol: -
Assembly: GCA_000143395.2
Location: NW:127904-132483[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.6e-06 9.2e-05 21.9 3.2 1 20 320 339 320 341 0.96

2 9 0.032 1.8 8.4 1.1 1 23 405 428 405 428 0.93

3 9 0.0001 0.0058 16.2 1.6 1 23 458 480 458 480 0.98

4 9 7.2e-06 0.00041 19.9 2.8 1 23 486 509 486 509 0.95

5 9 1e-05 0.00059 19.4 0.2 2 23 516 537 515 537 0.97

6 9 7.6e-08 4.4e-06 26.1 1.1 1 23 543 565 543 565 0.99

7 9 9.9e-06 0.00057 19.4 1.0 1 23 571 593 571 593 0.98

8 9 1.1e-05 0.00062 19.3 3.5 1 23 599 621 599 621 0.96

9 9 0.00019 0.011 15.4 1.8 2 23 628 650 627 650 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.6e-06	9.2e-05	21.9	3.2	1	20	320	339	320	341	0.96
2	9	0.032	1.8	8.4	1.1	1	23	405	428	405	428	0.93
3	9	0.0001	0.0058	16.2	1.6	1	23	458	480	458	480	0.98
4	9	7.2e-06	0.00041	19.9	2.8	1	23	486	509	486	509	0.95
5	9	1e-05	0.00059	19.4	0.2	2	23	516	537	515	537	0.97
6	9	7.6e-08	4.4e-06	26.1	1.1	1	23	543	565	543	565	0.99
7	9	9.9e-06	0.00057	19.4	1.0	1	23	571	593	571	593	0.98
8	9	1.1e-05	0.00062	19.3	3.5	1	23	599	621	599	621	0.96
9	9	0.00019	0.011	15.4	1.8	2	23	628	650	627	650	0.94

Sequence Information

Coding Sequence: ATGGAGTCTAGTAACTCGATGCCGCCAGGAATGGATTCTCCCGGCGAGGATATTATTCTGATGGAGACTGTAAAAAGTATGGTGTCGCATGAAGGACGCAATGAAGCAGAGGGAACCGAGGAGGACTTTTTCCTAATATCGCAGGACCAGGCTGTGCAATATCCTGAAGGGAACATCGAAGAAACGATGTCTCACAGGCATCAGACGGAGGTCACATTGACGTGGATGCATCTCTGTAGGATATGCGCTAACACGAGCGATCGTATGATACCCATCTTTGAGGGCGAGGGAGCACAACATGACTTGATCAGTAAAATACTCAAGTATTTGCCGATACACGTAACCGAAAGCGACACTTTGCCGTTGCAATTGTGCGAACGTTGCGCAAACTTTCTGATAGCCTGGCATGAATTAAATGAGGGGTGTCTAAATGCGGAGAGAAAGCTGCTGGAAATGCAAGATTCGCATCTGCGAAATAAACAAGAGtACTACAATCCTTCTTTGGATAATTTAGAAGTTACTGCACCTATGTTTGGCACAACAGCCAGCACGATCATTGCATCTAATATTACGTCTAATATTACGACTAATATTGCGTCTAATATTACGGATCCACTACCAAGTCAACAGGACGATGATAAAAGTGGAGGTTGCAgtatcgaaaaaattaataaatctgacAGGTGCGAGCTGACAAAGGAGAGATCTTTCACGGCATACCATTCCTCGTGTAATGCTGCACTGTGGGCAAGTAATGCCACGATAAAGTACGAAAGCAATCCGATGAGAAGCATGACGCTGATTGCtaaagaaatttcgaaaaGAGAAACACGCAATTTGTCAGATAATTGCACTGCAGAAAAATATGCCGAGAAAATGGACTCCAACACTTCAAGagatcaagaaaaaaataaatcgacaATTCTACAGTCAATGAGTGAATCTGTGAAGAAGGGTTATACTTGCAATAATTGTCAACGTgtctttaaaagaaaacacCATCTAATCCGCCATATGACGGACTGCAAATATCATGATTCAGCCAAAGAAGATTCGTCAAGAACGCGTAATAAAGTGacagaaaagaaaacaaagacCGACGATGAtacgataaaaaagaaaaaccgGTTAGTAGAAGATATTAAGAGCACAAGCGACGATGACGAGTTTTGCTTTCCATCAGTAAAACCATTGAAAAAACAATTCAGAACTTATCCATGCAACTATTGCGAGCACACGGCACAGAAAAAGaaactgttaaaaattcatcTGACGGAGGCGCATCCTGAGGTCGTAAATAGAAGTCGGAAGTCTTTTGTAGCCACAGAAACAGTGCTTCGCGCCCGAATAGAACACGACGgtaagatttattatcattgcAGTGAATGTGGCAAGAATCTGAATTCACCGTACACCTTCTACTGGCACTTGCGCATCCACACGGGCGAGCGACTATTTACTTGCCACCTATGTGGTAAAAGATTCCGCGTGAATCAGGGTCTGACACGACATTTGAAAGATACTCACGCTGGCATCAAGAATGTACCATGCGATCTGTGCGGCCGCATGTTCTCGACGCGGCGCAACGTCGAGGATCACAGACGCATTCATACCGGCGAGCGGCCATACGTCTGCAATGTCTGCGGCAAAACATTCAAGCAGAAGGCTTCTTTGTTCGTGCATAATCGTACGCATTCGGACGTATTCCCATTTAAATGTAGTTATTGCGATCAGACCTTCCGCACACGACCGCCACTGATGGTGCATATCACTAAGCACACTGGTGAGAAGCCGCACGCGTGCGATATATGCGGTCGTTGCTTTCGTATCAAGTATGAGCTAAAGCGGCATCGATTGATTCATTCTGATGAGAAACCCTGGCGCTGTACCGACTGCAGCCTCTCGTTCCGCCAAAAGCGCTACTTAGTTAATCATAAAAAGCTCAGTCACGAGCCATCACGAAGTTTGGCCGCCCCCCAAGTAACGGGCTGA
Protein Sequence: MESSNSMPPGMDSPGEDIILMETVKSMVSHEGRNEAEGTEEDFFLISQDQAVQYPEGNIEETMSHRHQTEVTLTWMHLCRICANTSDRMIPIFEGEGAQHDLISKILKYLPIHVTESDTLPLQLCERCANFLIAWHELNEGCLNAERKLLEMQDSHLRNKQEYYNPSLDNLEVTAPMFGTTASTIIASNITSNITTNIASNITDPLPSQQDDDKSGGCSIEKINKSDRCELTKERSFTAYHSSCNAALWASNATIKYESNPMRSMTLIAKEISKRETRNLSDNCTAEKYAEKMDSNTSRDQEKNKSTILQSMSESVKKGYTCNNCQRVFKRKHHLIRHMTDCKYHDSAKEDSSRTRNKVTEKKTKTDDDTIKKKNRLVEDIKSTSDDDEFCFPSVKPLKKQFRTYPCNYCEHTAQKKKLLKIHLTEAHPEVVNRSRKSFVATETVLRARIEHDGKIYYHCSECGKNLNSPYTFYWHLRIHTGERLFTCHLCGKRFRVNQGLTRHLKDTHAGIKNVPCDLCGRMFSTRRNVEDHRRIHTGERPYVCNVCGKTFKQKASLFVHNRTHSDVFPFKCSYCDQTFRTRPPLMVHITKHTGEKPHACDICGRCFRIKYELKRHRLIHSDEKPWRCTDCSLSFRQKRYLVNHKKLSHEPSRSLAAPQVTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00417794;
90% Identity: iTF_00015569;
80% Identity: -