Basic Information

Insect: Atta cephalotes
Gene Symbol: -
Assembly: GCA_000143395.2
Location: NW:1757618-1764549[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0084 0.48 10.2 2.6 1 23 45 67 45 67 0.99

2 13 0.0001 0.0058 16.3 3.0 1 23 240 262 240 262 0.99

3 13 1.5e-07 8.7e-06 25.1 0.4 1 23 268 290 268 290 0.98

4 13 0.0037 0.21 11.3 1.9 1 23 315 338 315 338 0.96

5 13 0.026 1.5 8.6 0.6 1 23 344 368 344 368 0.95

6 13 7.2e-06 0.00042 19.8 0.4 1 23 373 395 373 395 0.97

7 13 0.017 0.99 9.2 5.0 1 23 407 431 407 431 0.90

8 13 0.0028 0.16 11.7 2.6 1 23 433 455 433 455 0.97

9 13 2.3e-06 0.00013 21.4 0.2 1 23 461 483 461 483 0.97

10 13 4.5e-06 0.00026 20.5 1.4 1 23 489 511 489 511 0.98

11 13 0.0086 0.5 10.2 0.4 5 23 526 544 517 544 0.79

12 13 0.008 0.46 10.3 7.2 1 23 550 573 550 573 0.94

13 13 0.0021 0.12 12.1 1.8 2 19 576 593 575 596 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0084	0.48	10.2	2.6	1	23	45	67	45	67	0.99
2	13	0.0001	0.0058	16.3	3.0	1	23	240	262	240	262	0.99
3	13	1.5e-07	8.7e-06	25.1	0.4	1	23	268	290	268	290	0.98
4	13	0.0037	0.21	11.3	1.9	1	23	315	338	315	338	0.96
5	13	0.026	1.5	8.6	0.6	1	23	344	368	344	368	0.95
6	13	7.2e-06	0.00042	19.8	0.4	1	23	373	395	373	395	0.97
7	13	0.017	0.99	9.2	5.0	1	23	407	431	407	431	0.90
8	13	0.0028	0.16	11.7	2.6	1	23	433	455	433	455	0.97
9	13	2.3e-06	0.00013	21.4	0.2	1	23	461	483	461	483	0.97
10	13	4.5e-06	0.00026	20.5	1.4	1	23	489	511	489	511	0.98
11	13	0.0086	0.5	10.2	0.4	5	23	526	544	517	544	0.79
12	13	0.008	0.46	10.3	7.2	1	23	550	573	550	573	0.94
13	13	0.0021	0.12	12.1	1.8	2	19	576	593	575	596	0.94

Sequence Information

Coding Sequence: ATGGCGCAGTCTATCCTCGATGTTTTGACAGATGTCTCGCTGGACGGTTCCTCTGTGCAATCCTTGCTGGAGTCTCAAAACTTGATAGCTGAAGTCGAACAGTCAGCGATTGATCAGGATGAGGAAGACATATTCCAATGTGGCAAATGTAAAAGTCAGTTTACGTCACTTCAACTGTTCGTACTCCACAAGAGAACGCACCAGAAAACGCAGCAGCAAACAGTAGACTTGACTCAATTTCTAACAAACGATGAAAGTCAGGTAATGCATGTAGAAGATGTCGTTCAAGATGAGTCGCAGTACAATTCGCAGGAAACCTTTCAGCTTGGAGAACCTATTATTCTCGAAGAAGCAGACATGCTATTTAGTGTGGATCAGGAGGCTGCTAATTATTTCATGACAGACTCCACGTTCAGCGTGCCGATCATTTTGAGTACAGAGAACCTGGATACTTTCGATAATGCTGCCATCGAGGCGACGAGGGAAGATTCAAGCGAAGTACCGACGATACTGCAAAACGACATCAATTCACAGGAGGATGCCTCGAGTCAATCCGAACATCCTAGCGCTTCGTTGACGGACAACGAGCTATCTTTGGCGGACAACGAGCCATCTTTAGAGGACAACGAATCCTCTCTTGAGAACAACGAGACATCCCTCCAGGATAATTTACTCAGTGTATCAGAAAATGGCATCAATCGAACGCAGAACTTAAGGTACAAATGCGGTTATTGCAACAAGcagtttgcaaaaaaattctattggcAACAGCACGAACGTTCTCACACTGGAGAAAAGCCTTATCAATGTGTAGTATGTGGTCGTGCATTTGCGCAAAAATCAAATGTGAAGAAGCATATGTCCTCACACAAAGTATGGCCTGGCACCGCCATTCACTCATTACCACCAGAgGCGCCTCCGGACGGAAGTATCGACCGCACGTACCATTGTCAATTCTGCAAAGAAACGTTTGATTCGTACAAAGCTCTAAAAGGCCATCTAATTGTCTCGCATCTGGCATTGAAAGTGTATAAGTGCGTGCAGAGCAGCTGTAGTATGATGTTTTCGGATTTGGAGGAATTCCTCGAGCACACGCGCAACCATAAGTGCTCGGAATATCGATGTCACGTGTGCGGCGAAGTATTCAGTACCCTGTCGGATCTTGGTGGCCATCAGTATGTCCACTCCGTCCAGAAGCAGAAGACCACGGAGAAGTATTATTGCTGCTCGACTTGCAAATCGTCATTCTCAAATCTGGAGGCATTGCAGCACCATAAGGAAACCACTACACACAACTATGCATGCCTGCATTGTGGCAAAAGTTTTCTCATCGAGAGATTTCTGCGCCGTCACCTCAAAACTCACTCGGCATCGGCGAGATTTGTCTGTGAAGATTGTGGCAAAGCTTTTAAAACCGAGCAGTATCTGGCTAATCATAAACTTATACACAGCGAAGAGACGCCTTTTACATGTCCGCATTGCCCAGCCAGATTCAAGCGGAAAGATCGACTGGGCCGGCATATGCTGATCCATGATTTGACGAAGAGACTTAAGTGCCCGTTTCGCAATTACTTGGGCTGCATGAGTGAGTTTTCTCGGCCAGACAAGCTCAAACGGCATCTGCTGACACACAGCAACGTCAAACGATTCAGTTGCAGCCACTGCAATCGCAACTTTCACCGAGCGCAAGCTCTCAAACATCATGAGATGAATAAGCACAGCCTTAAATGTGACATTTGCTCCCATGCTTTTAAGACTAAAGAGCAATTGGTTACCCATAATTGCGAACAATCGAATGAGACCAAGAAGCACACGAGCTCTCAACTACCGAAAAAAGCATCCGGATCATTTAAGCCGAGGAAACCCACCCCAAAGAGACAAACATTATCAAAGACTGCAATCCCGCTTGCCGATAAAGAGAAATTAGAAAAGCTTAAGACTGATGAGATGGAAAGAAAGATTGCCTCTGAAACATTCATATCTGGTGATATCGATGAGAAAGCCAAcaagaaaatggaaaatattccTCCCGTTTTGAAAACAGAATCAACTGGCGGTGAATTAAACGAGCGATCCGACTCGCCAGTTACGGACTTCGAGAACGATTTCAAACGCAACATGGAATTCTACTCGCCCCACGCGAGCGagtaa
Protein Sequence: MAQSILDVLTDVSLDGSSVQSLLESQNLIAEVEQSAIDQDEEDIFQCGKCKSQFTSLQLFVLHKRTHQKTQQQTVDLTQFLTNDESQVMHVEDVVQDESQYNSQETFQLGEPIILEEADMLFSVDQEAANYFMTDSTFSVPIILSTENLDTFDNAAIEATREDSSEVPTILQNDINSQEDASSQSEHPSASLTDNELSLADNEPSLEDNESSLENNETSLQDNLLSVSENGINRTQNLRYKCGYCNKQFAKKFYWQQHERSHTGEKPYQCVVCGRAFAQKSNVKKHMSSHKVWPGTAIHSLPPEAPPDGSIDRTYHCQFCKETFDSYKALKGHLIVSHLALKVYKCVQSSCSMMFSDLEEFLEHTRNHKCSEYRCHVCGEVFSTLSDLGGHQYVHSVQKQKTTEKYYCCSTCKSSFSNLEALQHHKETTTHNYACLHCGKSFLIERFLRRHLKTHSASARFVCEDCGKAFKTEQYLANHKLIHSEETPFTCPHCPARFKRKDRLGRHMLIHDLTKRLKCPFRNYLGCMSEFSRPDKLKRHLLTHSNVKRFSCSHCNRNFHRAQALKHHEMNKHSLKCDICSHAFKTKEQLVTHNCEQSNETKKHTSSQLPKKASGSFKPRKPTPKRQTLSKTAIPLADKEKLEKLKTDEMERKIASETFISGDIDEKANKKMENIPPVLKTESTGGELNERSDSPVTDFENDFKRNMEFYSPHASE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00110004;
90% Identity: iTF_00016851;
80% Identity: -