Basic Information

Insect: Atta cephalotes
Gene Symbol: SNAI1
Assembly: GCA_000143395.2
Location: NW:3150739-3155247[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.3 17 5.3 0.2 3 17 65 79 63 80 0.86

2 14 6.1 3.5e+02 1.2 0.1 1 23 197 224 197 224 0.84

3 14 0.00024 0.014 15.1 0.2 1 23 229 251 229 251 0.95

4 14 1.1e-05 0.00061 19.3 1.2 1 23 259 281 259 281 0.98

5 14 5.7e-06 0.00033 20.2 0.2 2 23 289 310 288 310 0.97

6 14 8.2e-07 4.7e-05 22.8 0.5 1 23 316 338 316 338 0.98

7 14 2.2e-05 0.0013 18.3 2.3 1 23 345 367 345 367 0.98

8 14 1.1e-06 6.6e-05 22.4 1.2 1 23 373 395 373 395 0.96

9 14 1e-06 5.8e-05 22.5 0.2 1 23 401 423 401 423 0.98

10 14 4.4e-07 2.5e-05 23.7 1.2 1 23 429 452 429 452 0.96

11 14 2.1e-06 0.00012 21.5 0.5 1 23 458 481 458 481 0.96

12 14 2e-05 0.0012 18.4 1.5 1 23 487 509 487 509 0.99

13 14 5.7e-05 0.0033 17.0 0.4 1 23 515 537 515 537 0.94

14 14 0.00038 0.022 14.4 0.0 1 23 543 567 543 567 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.3	17	5.3	0.2	3	17	65	79	63	80	0.86
2	14	6.1	3.5e+02	1.2	0.1	1	23	197	224	197	224	0.84
3	14	0.00024	0.014	15.1	0.2	1	23	229	251	229	251	0.95
4	14	1.1e-05	0.00061	19.3	1.2	1	23	259	281	259	281	0.98
5	14	5.7e-06	0.00033	20.2	0.2	2	23	289	310	288	310	0.97
6	14	8.2e-07	4.7e-05	22.8	0.5	1	23	316	338	316	338	0.98
7	14	2.2e-05	0.0013	18.3	2.3	1	23	345	367	345	367	0.98
8	14	1.1e-06	6.6e-05	22.4	1.2	1	23	373	395	373	395	0.96
9	14	1e-06	5.8e-05	22.5	0.2	1	23	401	423	401	423	0.98
10	14	4.4e-07	2.5e-05	23.7	1.2	1	23	429	452	429	452	0.96
11	14	2.1e-06	0.00012	21.5	0.5	1	23	458	481	458	481	0.96
12	14	2e-05	0.0012	18.4	1.5	1	23	487	509	487	509	0.99
13	14	5.7e-05	0.0033	17.0	0.4	1	23	515	537	515	537	0.94
14	14	0.00038	0.022	14.4	0.0	1	23	543	567	543	567	0.92

Sequence Information

Coding Sequence: ATGATGGCTGATTTCGATAAAGATTCTATGCAGTGTTGTTTGGTGTGTAACACTAAAGTTGGGCTATCTGCTAGAAACAGTATACCCATCTTTGATGAGTCTTATACCATATCTAAGAAACCACTTGTGGATGTTATATCAGCTGTTTTAGGCATTGATATTAGTCATGACTCTGTGCATTCTCCTATCATTTGCAAAAAGTGTTTTAAGCAGTTCAATGAGGCAGATGAACTTAAAAGTAAAGTAACGAAACTTAAAACAGAATTATGTAACAGCTATAAAAAGACAATTGAAGTTCACAAGTTGTgtgatatatttcaaaatgaagaatataacGATCATGATTATACAGACAATACAGaaagtcaaaatattttaacaaagGAAGTGCAGGAAAGTACAGAAGAGATTacgcaagaaaaaaaagaacaagaatTGTTTATAGAACAAGATAACTCTTTACATTACTTCACAGAAGTTGAAGAAGAAGATGAAACAAGTAATTCGAATGATACAAAGAAATCAAAGaagagtaaaattaaagtagaaCAACCTCAAGAAGATATTGTATTTAGAAATGAATCTTCATACACCTGTTTGGTATGTCCAAACGACGAAGAAAAATTCACGGCAGATGCTAAACTCATTATAACTCACATGAAAGACGTACATGACTTACGTTTGTATATTTGTGATGTATGTGGGCAGGATTTTAGAAAGAGAAACGAACTTTCCACACATCTCGATGATCACGTCGCAAAAGAGGAAGGGGACTTTCAATGCGAAATatgtaatagaatatttagtaatttgcGATTATTCCGTATTcataaaagaatacattatCCGCAAGTAAAATCATGGCCCTGTGAAACATGTGGAAAGAGATACAAttccaaaaatttattagaggaACATATAAACACACACACTGGTGTTCGTCCATATATATGTGAAATCTGTGGTAAGGATTTCGCATCCAAGTATACATACAAAGCGCACGTAAAAACGCACGAAATACGACCTCGTCCATTCGAGTGTACTCAGtgcaataaaacatttttgagcCAGCAAAATTTGAATCAACATGAACGAACGCATAATGGCACAAAGGAATTTGTATGCCATCAGTGTggtAAGGCTTTTACTTCTGCACATAATTTAGAGGTACATAATATAGTACATACCGGATTTAAACCCTATGACTGTAGTATATGTGGTAAATCGTTTGCGCGTAAAGCGGAAATTCGTGATCATGAGAGAACTCACACAGGTGAGAAACCTTATCAGTGCGAGTTTTGTGGAGCTACATTTAGTCAAAGATCGAATCTACAATCTCACAAGCGAGCGACgcattataatgataaacgTTATAAGTGTGACGAATGTGGAAAaggttttaaaagaaaaagattattggattatcatataaaagcGGCGCACACTGGTGAAAGACCGTATAAGTGTGATATATGTGCAGCTACATTTGTCTACCCTGAGCACTTTAAGAAGCATACACGTATACATACAGGCGAAAAACCATATCTTTGTGAGGTTTGCGGCAAAGCATTTAATAGCAGAGATAACAGAAACGCTCACAGATTTATACATAGCGATAAAAAGCCATATGAATGTTTGGTGTGTGGCATGGGTTTCATGAGAAAACCATTACTTTACGCACACATGCAAGTTCAGggTCATTTGAATGATACCATAGTAGTAAACCAACCACGACTGACAACGGAAGAAGAGCAAGTAATAACTATTCCCAATAATAACGAACTACTAATGGAAAAAGTTGAGAATGAAGAGCTTGGTGAAACTGGATTATATGTAACTGAACTGAAAGATCACGTTATTATACAAGAAGGGGAAGATCAGATATATAATGAAGAGGATGTTGTACTAAATATACCAGCAGAAGAAACTGTAACTGATGAAGTAAATCATCTTGTTGAAGATCagATAAATTTTGTGGAGAGTGAAGTTACTGCAGACGATTGTAAAGTTGAAACTGAAGTAGAAACAGTATACACTTATAACGAGAATGAAGAAGGCGAGACAATAGTTGTACCATCCGCTTCGCAAGAAGAAGATAAGAATGTGCGATTAGTACAGATTAGATTTCCGACTTCTGTAGATGGAGAAGGCAGAAGTTGGTTAAGCTTAGTACAAAAtacttga
Protein Sequence: MMADFDKDSMQCCLVCNTKVGLSARNSIPIFDESYTISKKPLVDVISAVLGIDISHDSVHSPIICKKCFKQFNEADELKSKVTKLKTELCNSYKKTIEVHKLCDIFQNEEYNDHDYTDNTESQNILTKEVQESTEEITQEKKEQELFIEQDNSLHYFTEVEEEDETSNSNDTKKSKKSKIKVEQPQEDIVFRNESSYTCLVCPNDEEKFTADAKLIITHMKDVHDLRLYICDVCGQDFRKRNELSTHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYNSKNLLEEHINTHTGVRPYICEICGKDFASKYTYKAHVKTHEIRPRPFECTQCNKTFLSQQNLNQHERTHNGTKEFVCHQCGKAFTSAHNLEVHNIVHTGFKPYDCSICGKSFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDECGKGFKRKRLLDYHIKAAHTGERPYKCDICAATFVYPEHFKKHTRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQVQGHLNDTIVVNQPRLTTEEEQVITIPNNNELLMEKVENEELGETGLYVTELKDHVIIQEGEDQIYNEEDVVLNIPAEETVTDEVNHLVEDQINFVESEVTADDCKVETEVETVYTYNENEEGETIVVPSASQEEDKNVRLVQIRFPTSVDGEGRSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01476422;
90% Identity: iTF_00417759;
80% Identity: -