Basic Information

Insect: Atta cephalotes
Gene Symbol: -
Assembly: GCA_000143395.2
Location: NW:1165531-1179034[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4e-05 0.0023 17.5 1.4 1 23 463 485 463 485 0.96

2 18 1.4e-05 0.00082 18.9 1.9 1 20 491 510 491 513 0.94

3 18 9.9e-06 0.00057 19.4 1.4 1 23 519 541 519 541 0.98

4 18 5.7e-05 0.0033 17.0 4.4 1 21 547 567 547 569 0.95

5 18 7.8e-06 0.00045 19.7 5.6 1 23 575 597 575 597 0.99

6 18 1.8e-05 0.001 18.6 5.3 1 23 603 625 603 625 0.97

7 18 6.7e-05 0.0039 16.8 6.9 1 23 631 653 631 653 0.96

8 18 6.6e-08 3.8e-06 26.3 2.7 1 23 659 681 659 681 0.98

9 18 4.9e-05 0.0028 17.2 6.7 1 23 687 709 687 709 0.97

10 18 1.5e-05 0.00087 18.8 5.8 1 23 715 737 715 737 0.98

11 18 3.1e-07 1.8e-05 24.1 2.8 1 23 743 765 743 765 0.98

12 18 6e-06 0.00034 20.1 7.8 1 23 771 793 771 793 0.98

13 18 1.9e-05 0.0011 18.5 9.1 1 23 799 821 799 821 0.98

14 18 2.5e-05 0.0014 18.2 7.5 1 23 827 849 827 849 0.98

15 18 0.0012 0.068 12.9 8.8 1 21 855 875 855 877 0.94

16 18 9e-06 0.00052 19.5 0.4 1 23 883 905 883 905 0.98

17 18 0.022 1.2 8.9 4.5 1 23 915 937 915 937 0.98

18 18 3.5e-07 2e-05 24.0 1.3 1 23 943 965 943 965 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4e-05	0.0023	17.5	1.4	1	23	463	485	463	485	0.96
2	18	1.4e-05	0.00082	18.9	1.9	1	20	491	510	491	513	0.94
3	18	9.9e-06	0.00057	19.4	1.4	1	23	519	541	519	541	0.98
4	18	5.7e-05	0.0033	17.0	4.4	1	21	547	567	547	569	0.95
5	18	7.8e-06	0.00045	19.7	5.6	1	23	575	597	575	597	0.99
6	18	1.8e-05	0.001	18.6	5.3	1	23	603	625	603	625	0.97
7	18	6.7e-05	0.0039	16.8	6.9	1	23	631	653	631	653	0.96
8	18	6.6e-08	3.8e-06	26.3	2.7	1	23	659	681	659	681	0.98
9	18	4.9e-05	0.0028	17.2	6.7	1	23	687	709	687	709	0.97
10	18	1.5e-05	0.00087	18.8	5.8	1	23	715	737	715	737	0.98
11	18	3.1e-07	1.8e-05	24.1	2.8	1	23	743	765	743	765	0.98
12	18	6e-06	0.00034	20.1	7.8	1	23	771	793	771	793	0.98
13	18	1.9e-05	0.0011	18.5	9.1	1	23	799	821	799	821	0.98
14	18	2.5e-05	0.0014	18.2	7.5	1	23	827	849	827	849	0.98
15	18	0.0012	0.068	12.9	8.8	1	21	855	875	855	877	0.94
16	18	9e-06	0.00052	19.5	0.4	1	23	883	905	883	905	0.98
17	18	0.022	1.2	8.9	4.5	1	23	915	937	915	937	0.98
18	18	3.5e-07	2e-05	24.0	1.3	1	23	943	965	943	965	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACTGCGACCGCGAGTCTTGGCAATGTAGGGAGTACTCCCCATTCATCCGCGGACCTGCGTGTAGGTACTGCCGTAGCGTTAGCCTCCTCGGTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCACCAATCTGTTTTCTCCCGGACCGCTACCTCAAGTTTCGGTCTATCACCATTCCCACCACAACTCCTCGCATAGGAGTGGTGGCGGTGGGGAGACATCATCCTCCAAAGAGCCAGCCTCTTCACTGAACCAGGAAATGGCGTTGACTTCCAGCTCGCACCATCAACAACAGTCAACAGCCGCGCATCATCATCAGCCTTCAGttagcagcagcagcagccaCCACAGTTCTCTGCAGTCGAATCCACAGATTCCTGTGTCTCTTCCCGGCCTTAATTTAGACGGCGCACATCTACCAGCGAGTGTTAGTCATCTGGCTGCACATGCACAAATGCAACAAATGCAGGCGCAAGCACAACAGCAGCTGCaccagcagcaacagcagcaaccgccgcagcaacagcagcagcagcagcagtcTCATCATCAAATACCGAATCATCAGAATGCTCAGAACAACGGGCCAACGGCGCATGGCCAGAACGCGCAACGAGATGACAACAAAGTCAAGGACGAAGGCGGTAGTTGCACCACCGAGCGCTGCAGCGACAATCAGGTTCATTGTCAAGTTCAATGCGATCTGCAATTACAACCACCCCAAGATCTTCAACAGAGCTTGatgcaacagcagcagcagcagcagcagcagcagcagcagcaacaacagcagcaacagcagatTGGAGTCAACATCAGCGGTAACTCCACCACCGAGGGGGGAAACCAGAACAACTCCGAGAAACCCGAAAAAGAGAAGGAATTGCGGCAATTGAATATGACCCAATTTCAAGTCCCTGACTTGAAACCTGGAGGACACATGATGGATGTAAGGACAGCAGATGGATCGGTTGTCAAAATTAGCGCAGGAAACGAGCAAGATTTAGCTAAGACTCTTGGCGTCGAAATGgtacaaaatatgtacaaGGTTAATGTTGAAGATATTAATCAACTCTTGGCGTATCATGAAGTTTTTGGAAAGTTGCAGAGCGAAATTGCAGCTGGAACGACTTTAGTAGGTAGCACTGTGCCTACGCAAACAGTTACCACGATACAAAATGGCACGCCAATCGTGCAGCAGGTCCAATTGAACAAATTTGACATAAAGTCAAGCGACGGCGAAGCGACACCGGGTCCGAGCGCATCGCCCGTGTCTGTAGGCAGCCATGCTTGTGAGATATGCGGAAAAATCTTCCAATTTCGTTATCAACTCATTGTACATCGCAGATATCATACTGAGAGGAAACCATTCACATGTCAGGTATGCGGTAAAGCGTTCTCGAATGCGAATGATTTGACACGTCACGGCAAATGTCATCTGGGTGGATCTATGTTTACCTGTACTGTTTGCTTTCACGTCTTTGCGAATGCGCCTTCACTAGAACGTCACATGAAGAGACATGCTACCGATAAACCATACAATTGTACGGTCTGCGGTAAGAGTTTTGCGCGCAAAGAGCATTTGGATAACCACACAAGATGTCATACTGGCGAGACGCCGTATAGATGCCAATACTGTTCGAAGACATTTACTCGAAAAGAACATATGGTAAATCATGTTCGCAAACATACTGGTGAGACTCCACATCGATGTGATATTTGCAAGAAGAGCTTTACTCGCAAAGAACATTTTATGAACCATGTTATGTGGCATACAGGAGAAACTCCTCATCATTGTCAAGCTTGCGGCAAGAAGTATACACGCAAAGAGCATCTCGCTAACCATATGCGCTCACACACAAACGACACACCGTTTCGTTGTGAAATATGTGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCATACGGGCGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACGTTCACGCGAAAGGAACATCTCCTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACATCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTTCATACTGTCCGAAAGCATTTACGCGGAAGGATCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTAACGAATCATGTGCGCATCCACACTGGCGAATCTCCACATAGGTGTGAGTTTTGCCAAAGGACGTTCACTAGGAAAGAACATCTAAATAACCATCTCCGTCAACATACCGGAGATTCCTCACACTGTTGCAACGTATGCTCCAAACCATTCACAAGAAAGGAACATCTCGTGAATCATATGCGTTGCCATACTGGTGAACGTCCATTCGTATGCACAGAATGTGGCAAGAGTTTCCCACTGAAGGGCAATCTTCTCTTTCATATGCGCTCGCACAACAAGGGCAGTAATGCCGAAAGACCATTTCGCTGCGACCTGTGCCCTAAAGATTTCATGTGCAAAGGACACTTGGTCTCGCATCGGCGTTCGCATTCAGACGAGCGACCGCATAGTTGTCCGGATTGTGGGAAGACCTTTGTTGAGAAGGGCAATATGCTGCGACATTTGCGCAAGCACGCGGCTGAAGGCCCGCCGACACAAGTTAGCACACCATCGGCTATACCACAATCCGGTGTACTACCGATACCGGCAGCGGCGGCAGTTCTAGTCGGGCATCCTTTAGCACCGCCGGCACCGCCTGTGGTGCCGCAACACACGGTGGTTGTGCCGACACCACCCGGTGTATTAACATCATATTAG
Protein Sequence: MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATASLGNVGSTPHSSADLRVGTAVALASSVASSVAKYWVLTNLFSPGPLPQVSVYHHSHHNSSHRSGGGGETSSSKEPASSLNQEMALTSSSHHQQQSTAAHHHQPSVSSSSSHHSSLQSNPQIPVSLPGLNLDGAHLPASVSHLAAHAQMQQMQAQAQQQLHQQQQQQPPQQQQQQQQSHHQIPNHQNAQNNGPTAHGQNAQRDDNKVKDEGGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQQQQQQQQQQQQQIGVNISGNSTTEGGNQNNSEKPEKEKELRQLNMTQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00014883;
80% Identity: -