Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0096 8 5.8 0.0 12 27 16 31 11 38 0.79

2 7 0.025 21 4.4 0.1 14 40 100 130 91 143 0.76

3 7 0.0012 0.98 8.7 0.5 14 41 159 183 151 186 0.83

4 7 0.0055 4.6 6.5 0.2 14 38 187 208 182 208 0.85

5 7 0.11 96 2.3 0.1 19 33 219 230 216 239 0.77

6 7 0.2 1.6e+02 1.6 0.1 19 29 247 257 243 269 0.83

7 7 0.033 28 4.0 0.5 18 43 274 296 262 297 0.75

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0096	8	5.8	0.0	12	27	16	31	11	38	0.79
2	7	0.025	21	4.4	0.1	14	40	100	130	91	143	0.76
3	7	0.0012	0.98	8.7	0.5	14	41	159	183	151	186	0.83
4	7	0.0055	4.6	6.5	0.2	14	38	187	208	182	208	0.85
5	7	0.11	96	2.3	0.1	19	33	219	230	216	239	0.77
6	7	0.2	1.6e+02	1.6	0.1	19	29	247	257	243	269	0.83
7	7	0.033	28	4.0	0.5	18	43	274	296	262	297	0.75

Coding Sequence: ATGGGCACGGCGGCACGCGATCTCGAGCAGCAGCGCGATCGGCAAGCCGATCGGTCCGCGGCACAGTGCCGGATCTGTGCGACCGATATCGCCACTGACGACGGCGGAATGCACATTTTCGCCGAGGACGGTCGACGTCATTATCTGCAGACCAAAATACGGAAATACCTGCATATCTTGGTGAGTGAGACACGAGCGCACTTTCGCGCaaACACTGAAGTGGAAgacgaagaaaagaaagatgaaagTGAATCTAAATCGCACGAAGacgatgaaaaaattatatccaatttatcAGAGAAACCGCATGAATGTACAATATGTACCCGATCTTTTATATCGCAAATTGGCTTGCAAAATCATTTGTGGTCGCATTTACCCAAAGAGAGAAGATTCGACGGAAAGCCTATTTTACAATCTCAACACGTTTATTCTATAAATGGTGTACTTCACACGAATAGTGATAACAATTCGTCCAGCAACTTCATCTGTCCAATTTGCAGTAAAAAGATTTCTACAAAGGGAAATCTGAAAGTGCATTTAGAGACTCACAGGCCTAAAGGAAAGTACGGCTGCGACATATGTGGAAGAATTTTCAAAACTCAATCGAATCTGTTCAGACACAAGGAATACCACAGCGGCGTACAATTTCCATGTAATGTATGCGGGAGAGTGTATCCAACGAATTCGACGTTACGTGCTCACAGCATAACGCATTCGGACTTGAGACCGCACGCATGCCCGCTTTGTGATAAGACATTCAAGCGAAATCAGGATTTAAAATTCCACATAAATCAGCACACAGGTGCGAGGCCTTATCAGTGTCCTTACTGTCCGAAAGCTTTCGCGAGCTCCGGCAATTGTTTTTCACATCGTAAAAGAATGCATCCCCGGGAAGTCCATCGAGATCGACAAAGAGCGGCAGATTTAATGAGATGA
Protein Sequence: MGTAARDLEQQRDRQADRSAAQCRICATDIATDDGGMHIFAEDGRRHYLQTKIRKYLHILVSETRAHFRANTEVEDEEKKDESESKSHEDDEKIISNLSEKPHECTICTRSFISQIGLQNHLWSHLPKERRFDGKPILQSQHVYSINGVLHTNSDNNSSSNFICPICSKKISTKGNLKVHLETHRPKGKYGCDICGRIFKTQSNLFRHKEYHSGVQFPCNVCGRVYPTNSTLRAHSITHSDLRPHACPLCDKTFKRNQDLKFHINQHTGARPYQCPYCPKAFASSGNCFSHRKRMHPREVHRDRQRAADLMR

Sequence clustering based on sequence similarity using MMseqs2