Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4.7e-05 0.039 13.2 4.8 6 44 20 57 18 57 0.75

2 5 2.7e-05 0.023 13.9 6.0 4 44 74 111 73 111 0.92

3 5 9.2 7.7e+03 -3.8 0.3 28 36 151 159 150 160 0.63

4 5 0.045 38 3.6 5.7 6 27 186 205 183 223 0.69

5 5 2.3e-05 0.02 14.1 7.2 4 44 240 277 239 277 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4.7e-05	0.039	13.2	4.8	6	44	20	57	18	57	0.75
2	5	2.7e-05	0.023	13.9	6.0	4	44	74	111	73	111	0.92
3	5	9.2	7.7e+03	-3.8	0.3	28	36	151	159	150	160	0.63
4	5	0.045	38	3.6	5.7	6	27	186	205	183	223	0.69
5	5	2.3e-05	0.02	14.1	7.2	4	44	240	277	239	277	0.91

Coding Sequence: ATGGCAGAGCGAAAAGCAGAAGACGATCTAATTCCAGTTCGTCACTGGATACGTGGACATTACAGGAAATTGACAAGAACTAAAGCAACATGCAATCATTGTAATGTTCAACTCATTATAAATACTAAACATTTAGTTGCTTTCCATAAGCACTTAGTAAACATACATCCAGAAAAATTAtcagaagaaaagaagaaagaagttaAATTTTACTGGACTTGGGATCATTTTATCGCAAAAACCGATAGAGAGGCAATATGCAAACATTGCCAAGTAATAGTTAGATACAGACATTCAGCTCATTTAAAACAGCACTTAAAAGGACATCACAAgaTATTGAATCCGAGTtcatatagtataataaataacgaaacCACTTTATATAGCGATGCAAAGGAAAACAAGAATATAACTTTAAGAAATGCAAAACATCAAGAAGATTTACCTAACTCATCAAACCTAACTAACAATTTGTCTGAATGTATAAAAGGAACAAAAACACTTGATGAggAAGCAGAAGACAATGTAATTCCAGTTCGTCGCTGGATACGTAGACATTACACACGATTAACAATATCTTCATTGCAATGCAATcattgtaataaaagattcatAATGTGTATTTATCGCTTAGATGTTTTACGTAGGCATTTGCTGGTGGTACATCCAGACAAATTAACagcaaaaaagaagaaagaagttaaattttattggacttgGGATCATTTTACCGAAAAAACCGATAGAGAGGTAATATGCAAACATTGCAAAGTAACAGTTAGATACAGACATATAACTCATTTAAAAGAGCACTTAATAATACATCACAAAATATCAGGTCCAAATTCTAATAGCGTAATAATTAACGAGAGTTCTTCAGATAGTGATATAGATGCAAacgataagatataa
Protein Sequence: MAERKAEDDLIPVRHWIRGHYRKLTRTKATCNHCNVQLIINTKHLVAFHKHLVNIHPEKLSEEKKKEVKFYWTWDHFIAKTDREAICKHCQVIVRYRHSAHLKQHLKGHHKILNPSSYSIINNETTLYSDAKENKNITLRNAKHQEDLPNSSNLTNNLSECIKGTKTLDEEAEDNVIPVRRWIRRHYTRLTISSLQCNHCNKRFIMCIYRLDVLRRHLLVVHPDKLTAKKKKEVKFYWTWDHFTEKTDREVICKHCKVTVRYRHITHLKEHLIIHHKISGPNSNSVIINESSSDSDIDANDKI

Sequence clustering based on sequence similarity using MMseqs2