Basic Information

Insect: Atrophaneura dixoni
Gene Symbol: -
Assembly: GCA_018248015.1
Location: DWHX01000543.1:38589-44857[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0073 1.1 11.4 0.7 1 20 245 264 245 266 0.95

2 14 0.051 8.1 8.7 1.5 2 23 287 309 287 309 0.92

3 14 5.7 9e+02 2.3 0.3 2 10 323 331 322 335 0.90

4 14 1.7 2.7e+02 3.9 2.2 1 19 346 364 346 367 0.93

5 14 0.47 74 5.7 0.5 2 23 374 394 373 394 0.92

6 14 0.014 2.2 10.5 0.8 2 23 916 937 915 937 0.96

7 14 0.71 1.1e+02 5.1 0.1 1 23 956 977 956 977 0.96

8 14 0.0041 0.65 12.1 1.5 2 23 1025 1046 1025 1046 0.95

9 14 0.031 4.9 9.4 0.2 2 23 1063 1084 1062 1084 0.96

10 14 3.4e-06 0.00053 21.9 3.6 1 23 1090 1112 1090 1112 0.99

11 14 0.25 40 6.5 0.0 1 23 1117 1139 1117 1139 0.97

12 14 0.41 65 5.9 2.9 3 23 1146 1167 1144 1167 0.95

13 14 0.18 29 7.0 0.2 1 20 1172 1191 1172 1195 0.91

14 14 0.003 0.47 12.6 1.5 3 23 1204 1225 1203 1225 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0073	1.1	11.4	0.7	1	20	245	264	245	266	0.95
2	14	0.051	8.1	8.7	1.5	2	23	287	309	287	309	0.92
3	14	5.7	9e+02	2.3	0.3	2	10	323	331	322	335	0.90
4	14	1.7	2.7e+02	3.9	2.2	1	19	346	364	346	367	0.93
5	14	0.47	74	5.7	0.5	2	23	374	394	373	394	0.92
6	14	0.014	2.2	10.5	0.8	2	23	916	937	915	937	0.96
7	14	0.71	1.1e+02	5.1	0.1	1	23	956	977	956	977	0.96
8	14	0.0041	0.65	12.1	1.5	2	23	1025	1046	1025	1046	0.95
9	14	0.031	4.9	9.4	0.2	2	23	1063	1084	1062	1084	0.96
10	14	3.4e-06	0.00053	21.9	3.6	1	23	1090	1112	1090	1112	0.99
11	14	0.25	40	6.5	0.0	1	23	1117	1139	1117	1139	0.97
12	14	0.41	65	5.9	2.9	3	23	1146	1167	1144	1167	0.95
13	14	0.18	29	7.0	0.2	1	20	1172	1191	1172	1195	0.91
14	14	0.003	0.47	12.6	1.5	3	23	1204	1225	1203	1225	0.95

Sequence Information

Coding Sequence: ATGGCAGGTATAGACAAACTTGTCAATCTGAAGAAGAACTTACTGAACGGCAGTAAGGATCAACTGGATCAAGCAGCGTCGGTCGCAAACCAGATAAATTTCCAAGTACAAGTTAAAGTTGAAGAGTGTGCGGACGATGTTGGTCAAAGTAATTGTGTTGTGCCCGATACTGCTGTGGCTGAATGTGATGCTAGTTCTATGGAAGTTGATAAACTGtatgaaaatcattattacCTGCGGATAGTGGGGCCGGTGATCGATAGTAGTAACAATCGGAAGGTCACGGAGTACATCTTCACAACGAGCAGCATACGCAAGGCTCTGGCCGCCCAGGCCAAGTTGAACACCAGCGCCGCCGACAGGTACATACAGATAGATTTGAACAACGCGCACGGCGACATCATCATACCACCGCGGCCACACCACGACGAGATCGTACAGAAGTGTCTGCAGAGCTGGAGCAGATGGTACGAGACCTGCCCAGGGTTCAAGGATACACCGCTGCTGTACAAGTGCTACGTGTGCAACAGGGGATGGTGGAGGCTGCACCCGTTCAGAGAACACCTCAAGGATCACCGCGATCACATCCTCATCAAACCAGAGCCCCGGCCGTACGAGTACCATGTGGTCGCCTCCTTCAACCGAAATGATGAGGTTAAGGATGTCACCGTCGATGGTGACTGCTGGAGATGCGACGAGCCGATGGAgtatcacaaaaataaaacttcgaATTACGAGTGCGAGGGTTGTAAAGTCGTGTTCATCACATGCACCAAGCTGAAGGTCCATCACGCTGTCTGCGTTAAGTACATAGAGCTGAAGTTCAAGAAGCAGATCGAGTCGTCGAAGGCGCCGAGGGTCTGCAGCCTGTGCGGCCGCCATTACGCCACCGACAGGCTGCTCCATAAACACCTGATCGCCAACCATTCGCCGAGGAGCGACGAACCGGTGCCGTCGCAGGGCGTACAATGCAAGCACTGCGACATGAACTTCTTCATCCAGAACTACCACGACTGCCTGATGAAGTTCAGGGGCTACAAGTGCTCGTACTGCTGCAGGAAGTTCGTCACCCACGCGTTGCTCGACCTGCACAACGAGGTGCTCAGCGACAGCACAGTTAAGTGCGAGATATGCGGGCAGTCGCTGAGGGAGTGCATGATGCTGGAGCACATGCTGGTGCATACGAAGAACTACGGCGCGGTGTACTGGTGCCGGAAGTGCGACTACAACATCCTGTTCGCGAAGTATCATTTGTTGCTCAGCCACATGAGGCTTCACAGTAAATCAACAGAGAAGAGGAGGTTCGTCTGCAAGatGCTGCTTCCAACGATGTGCATCAATGGAGAGTTTGCTGTATACGCGAGCACCAAGGAAATATCAGAATCCAAGGTTCTGGACTTCATTACGGGGAAAAATCATATAAAGCCTAAATATCCAATCAATCGCTGGAAATTGATGAAGGATGGAGTGAAACCGTCGGAGGTCCTCGTTGTGAACGATGGAGTCGGCGATGTGAAGACTATAGATGACAAGAAAGCCGCGGCGGCCGATGATCCAGACGATCTAGCGCTGCAGTTAGACGCGGAAATACAAAGGGATCTAGAAATGGAGGAGGCGATATCCAAAGTCTTTAAAGCGTCTAATTGCTACAAGAAATTCTTGGAGAAAGAGTCCGCTGAACCCATCGATGATTATCTTTATGGTGACGATATCATCATTCTAGAAAAGCCGGATgatgttttaatagttatagACTCGGATTCAGATGATGAGAGCGGCGCCGGAGTTGCTGCTGATACTGGTGAAGGAAGAAAGGGAAAGCAAAATGACCGTGTTGGCAATGTTAAAGGCAATTCCGCCCGGGCTGTTCAATCGACAACTTCACATCCAGTTCATAAAGATGAAGAATCGGACTTTGATGAAAATCTTGTTATAAAAGAGGAATCTATCGGTGATTCTGATTTTGATGAACatgaaattgattatttaaggGATTCAGAGGCAGCGGACGATGACGGTGAAGACGGaggaaattttaatgttgacGTTAAAAATGAACCTGTGAATTTTGATGTCCACGAACAGTCCGCAAACGATTCTAATGAACTGAGtcaattttctaatataagCGCCGTCAAAGTGGAGGCTGAGGATTGTGATCCGGTTGCCGATGCAAAGAAGAAAACAGCAAAACGACAAGCGGATGGACCAAGAGCGAATGCGGATGCGAATGCAGATAATAAAgcgaagaaaataaaaactgaactaGACGAAACAGTTCGCGTTAAAGAGGAAATTGTGAGCAGCTACGAAGAAGAGAAGTCCACGCTGGATACGGCACCGGAACCGGATAATTCCGATGTTTCCCACGAGAAAAATGTCATCGATAattttgttgatataaaaGAGGAATCCAATTATTCTATTGAGTATTTAGACCCTGAGGAGCTTGAAAACGACATAGACTGGACTTTGCATGTCCAGGAGGAGACGGTCGTCGAAGTAGCAAAGCCCGAACCATCGACCAGCGAGAAGCGCGCCAGAACCAAAGCCGCCAACAAGGCACACCTCAAGAATCCCACCTTCTTCACCTGCGCCAAGTGCTCGTTCTCGGCTAAATACAGGAAGTACATCGAGCACGTGATCACCAAGTGCTCGGGCAGGTGCTGGAGCTGCACGCGCTGCGGGAAAGAACACGAGGCCCTGTTCTCCTACGTAAAGCACCTGAAGGAGGAGCACCGGTCGTCGTGCCCCGAGTGCCGGGAGGTGATCGACACGGCGAACCACCTCCACCGGCACATCGTGATGCACGTGCGCAGCCTGTTCTTCAACGAGGGCAAGTACCTCACTGACGTGACGTGGACGTATGAGTGCAGGAAGTGCAGCGAGGTGGTGAGCTTGGAGGACCTGTTCGCGCACTGGGAGTCGCACTTGAGCGCGGACAGTAAGGTCGCGGCGGACGGCGGCGCGGGGCAGAACAGAACGGAAGTGAAGAGGCTCAGCCCCGAGATGGTGCAGAGTGTTATTCAGAGGCTGCTCATGCAGGTGAAGCGGAACAGAGGGAAGCTGGGCGAGTGCCAGGTCTGCTCGAAGAAGTTCGAGAGAAAGAACGACACCAAACGGCACCTGATAGAGCACCTCCTCACCGAGGCGCTCCAGGACAAGGTCGACACCAACAACTGCCTGCGGTGCCCGATCTGCGGCGAGGACCTGCACGACGTGTACACTTGGAAGCTGCACATGCGCGACCACGCTGACCTGCCGGAGTACCAGTGCAAGTTGTGCAAGAAGCGCTTCAGCGACTCCAGCAACTTCGCGAAGCACAAGAAAGTGCACAACTTCTACTCGTACGTGTGCGATCTGTGCGGCGGCAAGTTCCAGGCGGAGGCCAGCATGGTGAAGCATCTGATGCTCCACGAGCAGCCGCCGGTGCACTGCAAGGTGTGCGCCGCGCCGTTCCACAGCACCTCGCGGCTGAAGGTGCACATGAAGCAGCGCCACCAGCTCAGCACGTTCCCGTGCATGATATGCAAGAAGCGCTTCGGCAGCCTGAAGGACAAGTGGGACCACATGTGGATCGAGCACAAGCAGCGCAGCGTGCAGGCGGACTGCCCCATATGCATGAAGTCCTACAGGAGGAGGAGCGACGTCAAGCATCACCTGAAGGAGGAGCACGGGTGA
Protein Sequence: MAGIDKLVNLKKNLLNGSKDQLDQAASVANQINFQVQVKVEECADDVGQSNCVVPDTAVAECDASSMEVDKLYENHYYLRIVGPVIDSSNNRKVTEYIFTTSSIRKALAAQAKLNTSAADRYIQIDLNNAHGDIIIPPRPHHDEIVQKCLQSWSRWYETCPGFKDTPLLYKCYVCNRGWWRLHPFREHLKDHRDHILIKPEPRPYEYHVVASFNRNDEVKDVTVDGDCWRCDEPMEYHKNKTSNYECEGCKVVFITCTKLKVHHAVCVKYIELKFKKQIESSKAPRVCSLCGRHYATDRLLHKHLIANHSPRSDEPVPSQGVQCKHCDMNFFIQNYHDCLMKFRGYKCSYCCRKFVTHALLDLHNEVLSDSTVKCEICGQSLRECMMLEHMLVHTKNYGAVYWCRKCDYNILFAKYHLLLSHMRLHSKSTEKRRFVCKMLLPTMCINGEFAVYASTKEISESKVLDFITGKNHIKPKYPINRWKLMKDGVKPSEVLVVNDGVGDVKTIDDKKAAAADDPDDLALQLDAEIQRDLEMEEAISKVFKASNCYKKFLEKESAEPIDDYLYGDDIIILEKPDDVLIVIDSDSDDESGAGVAADTGEGRKGKQNDRVGNVKGNSARAVQSTTSHPVHKDEESDFDENLVIKEESIGDSDFDEHEIDYLRDSEAADDDGEDGGNFNVDVKNEPVNFDVHEQSANDSNELSQFSNISAVKVEAEDCDPVADAKKKTAKRQADGPRANADANADNKAKKIKTELDETVRVKEEIVSSYEEEKSTLDTAPEPDNSDVSHEKNVIDNFVDIKEESNYSIEYLDPEELENDIDWTLHVQEETVVEVAKPEPSTSEKRARTKAANKAHLKNPTFFTCAKCSFSAKYRKYIEHVITKCSGRCWSCTRCGKEHEALFSYVKHLKEEHRSSCPECREVIDTANHLHRHIVMHVRSLFFNEGKYLTDVTWTYECRKCSEVVSLEDLFAHWESHLSADSKVAADGGAGQNRTEVKRLSPEMVQSVIQRLLMQVKRNRGKLGECQVCSKKFERKNDTKRHLIEHLLTEALQDKVDTNNCLRCPICGEDLHDVYTWKLHMRDHADLPEYQCKLCKKRFSDSSNFAKHKKVHNFYSYVCDLCGGKFQAEASMVKHLMLHEQPPVHCKVCAAPFHSTSRLKVHMKQRHQLSTFPCMICKKRFGSLKDKWDHMWIEHKQRSVQADCPICMKSYRRRSDVKHHLKEEHG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -