Adix009774.1
Basic Information
- Insect
- Atrophaneura dixoni
- Gene Symbol
- -
- Assembly
- GCA_018248015.1
- Location
- DWHX01002630.1:1-6031[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.053 8.4 8.6 0.2 3 23 115 135 113 135 0.96 2 13 0.11 17 7.7 0.3 2 23 139 161 138 161 0.93 3 13 0.23 36 6.7 0.3 6 23 165 182 163 182 0.94 4 13 8.6 1.4e+03 1.7 0.6 1 23 198 221 198 221 0.85 5 13 0.0094 1.5 11.0 2.8 1 23 230 253 230 253 0.94 6 13 8.6 1.4e+03 1.7 1.2 8 23 302 318 293 318 0.85 7 13 0.3 48 6.3 0.1 3 23 330 351 328 351 0.85 8 13 1.8e-05 0.0028 19.6 1.2 1 23 385 407 385 407 0.97 9 13 8.3e-06 0.0013 20.6 1.5 1 23 414 436 414 436 0.98 10 13 4.5e-05 0.0072 18.3 2.3 1 23 441 463 441 463 0.96 11 13 0.00011 0.017 17.1 1.6 1 23 469 491 469 491 0.98 12 13 1.3e-06 0.0002 23.2 1.5 1 23 497 519 497 519 0.97 13 13 0.00047 0.074 15.1 2.0 2 23 526 547 526 547 0.97
Sequence Information
- Coding Sequence
- ATGTCGTCGGACGATTCTGATGACGAACCTCTGTCAGTTATAGcagcagaaaaaaaattacacccAGAAAAATACCCAGAACCTGTTGCTGAAGACGACGAAAAAGCTcctagaaaaagaaaaagaaagtcaCTTACGCCGAAAAAATTAGGTTTACCTATTAAAATAAGGAAACAAAGAAGCTTACCTCCACCGCCTGTGATCGAAAGACCCACAGATGTTTGGCTTTACCTTAAAGATTTAAATCCTGCAGGGCCCTATAGTTGCTTGTTATGTACCGATTGGTTCATTAATCGTACGAAAATGATTATGCATTATGTGTTGAAccataaaaaagatttttgtggTATTTGTAGATATTTTGTCACTGACAGAGAAGCTTGGCGTgcacatataaaatttcacataCCATGGCCATGCTCACAATGTATTGCAAACTTCCCTAATCAGGTTACATTACGCCACCACCTCAGCAGTGTACATAAACTGTTTTGCGATAAGGAATTTGACAATAGAGAAATGACAAGGAAACATCTTACCGAGCATTGGGAGTCAATGGAATATGACAACTGTTTCAGCCCACATCTGGGTTTCAAATGTAGATTCTGCCCAACCCTCTTCTGGAATGAAACAGATCGTGAACAGCATCAAGTGAGGGcacatttttctaaatataaagaccaattttataaatgtgaaaGTTGTTCTGAAATATTCAGTGACAAGgttTGGTTTATCCATCACCACCTGGAGAAGCACTTTGCGAACAAGATGACAACATATCTCTTAAAATGCTGCCTATGTTGCATTGTATTGCCGAATGTCGATGATATGAGAAATCATTTTCAAGAGGAGCATCCAGAGTCCAGGAAGGTGTACTGTTCATTGGATTCATGTCAATACAAACCTTTAAGTCACAGGAAGTCATTTAAATTGCATGTAAagACGATCCATAATCCATCAGCGCGCGCCGAGAAGGTCGTTAACTGCGCGGTGTGCGGGCGAGAGTTCGCCAGCTCGCGCGCGTGCGGCGCTCACATGGCGCAAGTCCACGGGCCCGGCAAGTTCAAGTGTAAACTATGTAGGGACGTACTTCACACTATGGATGAGagGAAGTTACATTATCTCCTGCGTCACCCTGGCCGGCACCCGTACGAGTGCGTGGATTGCGGCAAGTCGTTCCAGTACAAGTCATCCCTATACATGCACCGGCAGGATCACATACCGAACAAGCAGACTTATACTTGTAATTACTGCAGCAAAGTTTTCATAaaaaaggACTCGTTCCGGGAACATGTGCAAATTCACGAGGGACCGCGACACGCGTGCTCGTACTGCCCGATGAGGTTCGTGCAGCGCTCCAACATGCTGCGACACGAGCGCCGGCACACGGGCGAGCGGCCGTACGCCTGCCCGCACTGCCCGCGCACCTTCGCGGACAAGGGCGCATGCAACTCGCACGTCAGGACACATTCCAAAGAGACGTCGTTCGCATGCCTCTATTGTGGACAGACATTCGTACAAAAATCCAAACTCACTTATCACATTAGAAAACACACGGGCGAgaACTTAGAAACGTGCCAGGTCTGCTCCAAGATGTTCACAAGTGGTTGTGCCCTCCGCGAGCACATGAAGATACATGTAGCGAAGAAGGAATTAGTCAAATGTCCGTTATGTG
- Protein Sequence
- MSSDDSDDEPLSVIAAEKKLHPEKYPEPVAEDDEKAPRKRKRKSLTPKKLGLPIKIRKQRSLPPPPVIERPTDVWLYLKDLNPAGPYSCLLCTDWFINRTKMIMHYVLNHKKDFCGICRYFVTDREAWRAHIKFHIPWPCSQCIANFPNQVTLRHHLSSVHKLFCDKEFDNREMTRKHLTEHWESMEYDNCFSPHLGFKCRFCPTLFWNETDREQHQVRAHFSKYKDQFYKCESCSEIFSDKVWFIHHHLEKHFANKMTTYLLKCCLCCIVLPNVDDMRNHFQEEHPESRKVYCSLDSCQYKPLSHRKSFKLHVKTIHNPSARAEKVVNCAVCGREFASSRACGAHMAQVHGPGKFKCKLCRDVLHTMDERKLHYLLRHPGRHPYECVDCGKSFQYKSSLYMHRQDHIPNKQTYTCNYCSKVFIKKDSFREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACNSHVRTHSKETSFACLYCGQTFVQKSKLTYHIRKHTGENLETCQVCSKMFTSGCALREHMKIHVAKKELVKCPLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01496902;
- 90% Identity
- iTF_01496902;
- 80% Identity
- -