Adix003751.1
Basic Information
- Insect
- Atrophaneura dixoni
- Gene Symbol
- -
- Assembly
- GCA_018248015.1
- Location
- DWHX01000799.1:10148-12788[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7e-05 0.011 17.7 2.7 1 23 292 314 292 314 0.96 2 12 2.7 4.2e+02 3.3 0.2 5 14 378 387 376 391 0.86 3 12 0.015 2.3 10.4 2.5 1 23 406 429 406 429 0.97 4 12 0.00035 0.056 15.5 1.3 1 23 433 455 433 455 0.98 5 12 1.3 2e+02 4.3 0.3 2 23 477 499 476 499 0.91 6 12 0.0072 1.1 11.4 1.0 1 23 503 526 503 526 0.97 7 12 0.19 30 6.9 0.2 2 23 549 571 548 571 0.93 8 12 0.00071 0.11 14.5 2.1 1 23 581 603 581 604 0.95 9 12 0.073 11 8.2 1.2 5 23 623 641 620 641 0.93 10 12 0.01 1.6 10.9 0.4 1 23 647 669 647 669 0.94 11 12 0.49 77 5.6 2.7 1 22 675 696 675 699 0.90 12 12 5.8e-06 0.00091 21.1 1.1 2 23 758 779 757 779 0.97
Sequence Information
- Coding Sequence
- ATGGAATtgcaaaatagttttattgaagAAAACAAAGTTTCCGAtgatggtttaaataaaatgagtattAAACAAGAAGTTCATCCTGAAATTAAAGATGACATACAAGTTAAAACTGAGGTAGAATACAATGAGCATTCATCAGTTGAAAATCcatttgaaaatatacaacTGCATGTTAAACAGGAATTCACACAGTCCCAGAGCATTGAAAAGCAAGAGTATCATGATGGACACGAAAAATATGATATAGCTATTGAAAAAGATGATGTCAGATCAAACTTTAAGATAGAGGAAGACACAACAACCAACatatatgatgatgacataGAGATTAAACAAGAACATGAGATAGATGATAATTCATGTGATTATTCCATTTTTGAAGATTCACAAAGTATAAACAGTGATGAAgcaaaagctttaaataatgttgaagCATGTCTGCAGGATGATATCAAGATAAAGACTGAGAGTGAGTTGTTTGAGaTTACCCAAAAtcatgaaatagaaaaagtgAATGTAAAGGATGAATTGGAAATAACAGTGACAGAAACCCATCTTATATCAAACAAACTCTTTAACACCACATCCACAGTAACAAATCCACATGATGGTCTTGTTGAATCGCAAACTACAAAGACATTAGTTATGGAAATACTACCAATGGCAAATACAGATGGTGTTTCGCTAAGCAAAATTGATAATCCTGAAGAAATACTCCCCACATCTTATACTGATAATGAATACAATGAAATAGATTACAATGATACTTTTCAACTGAATTCAATTACTGGAAATGTGATGTCATTAGAGCAAGAGGCTTATGGGCTTTTGGAAGCGAAAAGTAAAATTGGCAGATTAGATCGTCCCCATATTTGTCCTAAATGTCCAAAAGCTTACAAAACTGCCGCCTGTTTGAGAAAACACAAGAACGTCCATACAAGCATTGAAAAGCGCGCTATGGGAATCATAAAAGGGAAAAATACTAGAAAGGCTAATATGAAGAAGAAGTTGAAAGAGGAAGACAAGAAATACTCTCCTAAGATAaggaaagaaatgaaaaaggaCATTAAAATTGAGAATGTGACCTCTTTAGTTGACAATGTGAAGAAAGAAGGTTATGAATGTACGTGCGGCAAGATTTTTCGACGCAGAAGTAGAATGGAGACATGTTTACGGTCACACAATATGTGCTCAGATCTAAATTCTTACTATCCATGCGTTACGTGTTGTAAGCAGTTCAAAGACAAAGAAGAACTTGCGTCACATCGCAAGAGACTACACAGAAAGAGATTTCCATGCAAATTTTGCCCCACGGATTATAACACGCGAAAAGAACTCTTCAAGCATTTACAAATACATCAAAAAGTTCAGGTCATGGAGTATAAAGTGTTATCAGAAGTTGTCAAAGGGCAACAGGAATTGAAATGTTTCATGTGCTCGCAGACTTATTTGGAGTTGTCAGAACTGAAGTCTCATGTGATGGACGATCACAAGGAGCCGTATGTTTGCCCACATTGCAATGGTACCTTTTCCAAAATCATTGACTTCGGTAACCATACAAAAACTGATCACCCTGAGGTAGAGGGACAATCGGTATTGGATGTTCTTGAAGCTTTCTCGAAGTTGGTAAAGGCTTGGAAATGCGAGGAATGCGAAGTTCAGTTCCACGAGGCCGACAAACTCGCGATGCATCAGATAGAGAAGCACAGTCCCGATCTAAAAATCGAACCGCAGTTCCAGTGCATAGATTGTCGAAGGGTGTTCATAAGTCAGAAAGGTCTGACGTCACACAGACGAGTACATCACAGTACAGAGAATGTGGAGGATCAGGAAACGATGGAGAAAACGGTGATGTGTATAGAGTGCAGAAAGATTTGCAGGGATGTGAACGCGTTGACGTCACACATGCGGTTACATTCGCTGGAACGGAAGTATCCGTGCAAGTTCTGCGACTTTAGATTCGCGACACCCGAGAAGAGGAAAGCACACGCGGAACTGCACACGGGGGATATGAAGtacgtttgttttatatgcGAATATCAGTGCACCTCAGAGAACAGGCTGAAACAGCACAAGTTATCGGCGAAACATTTGAACATGAAAGATTTTCTGGCAACTGGTAAACCGTTAGAGGAAGAGAAGCAGTCCACATCTAAGAAGGCTAAAGCGGACGATTCCGTTGAGAAAAATGAGTGGATGGTCGTTAAAGGGAAGAAGGCGGAAGCGGAGAGCGGGGAGGAGTCCTCGTCTAACGCTGAAGGATCTACGTGTGACATCTGCGGCGAGACCTTCAAAACTGAATCGAAAATGTTAAAGCACCAGAACACGCATCCATTTATAGAAATACCAAACGACGATAAGCCGACgaggatattttttaaatag
- Protein Sequence
- MELQNSFIEENKVSDDGLNKMSIKQEVHPEIKDDIQVKTEVEYNEHSSVENPFENIQLHVKQEFTQSQSIEKQEYHDGHEKYDIAIEKDDVRSNFKIEEDTTTNIYDDDIEIKQEHEIDDNSCDYSIFEDSQSINSDEAKALNNVEACLQDDIKIKTESELFEITQNHEIEKVNVKDELEITVTETHLISNKLFNTTSTVTNPHDGLVESQTTKTLVMEILPMANTDGVSLSKIDNPEEILPTSYTDNEYNEIDYNDTFQLNSITGNVMSLEQEAYGLLEAKSKIGRLDRPHICPKCPKAYKTAACLRKHKNVHTSIEKRAMGIIKGKNTRKANMKKKLKEEDKKYSPKIRKEMKKDIKIENVTSLVDNVKKEGYECTCGKIFRRRSRMETCLRSHNMCSDLNSYYPCVTCCKQFKDKEELASHRKRLHRKRFPCKFCPTDYNTRKELFKHLQIHQKVQVMEYKVLSEVVKGQQELKCFMCSQTYLELSELKSHVMDDHKEPYVCPHCNGTFSKIIDFGNHTKTDHPEVEGQSVLDVLEAFSKLVKAWKCEECEVQFHEADKLAMHQIEKHSPDLKIEPQFQCIDCRRVFISQKGLTSHRRVHHSTENVEDQETMEKTVMCIECRKICRDVNALTSHMRLHSLERKYPCKFCDFRFATPEKRKAHAELHTGDMKYVCFICEYQCTSENRLKQHKLSAKHLNMKDFLATGKPLEEEKQSTSKKAKADDSVEKNEWMVVKGKKAEAESGEESSSNAEGSTCDICGETFKTESKMLKHQNTHPFIEIPNDDKPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01130278;
- 90% Identity
- iTF_00250011;
- 80% Identity
- -