Basic Information

Insect: Atrophaneura dixoni
Gene Symbol: -
Assembly: GCA_018248015.1
Location: DWHX01009110.1:3642-6619[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.3 2e+02 4.3 0.9 1 23 236 259 236 259 0.93

2 9 0.089 14 8.0 3.0 2 23 284 306 283 306 0.95

3 9 0.001 0.16 14.0 4.1 1 23 325 347 325 347 0.98

4 9 0.004 0.62 12.2 2.2 2 23 352 373 351 373 0.96

5 9 0.00031 0.05 15.7 0.3 1 23 378 401 378 401 0.96

6 9 0.97 1.5e+02 4.7 0.9 2 23 407 429 406 429 0.93

7 9 0.0025 0.4 12.8 3.3 1 23 435 458 435 458 0.97

8 9 1e-05 0.0016 20.4 2.4 2 23 464 485 463 485 0.98

9 9 4.8e-07 7.6e-05 24.5 1.8 1 23 491 513 491 513 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.3	2e+02	4.3	0.9	1	23	236	259	236	259	0.93
2	9	0.089	14	8.0	3.0	2	23	284	306	283	306	0.95
3	9	0.001	0.16	14.0	4.1	1	23	325	347	325	347	0.98
4	9	0.004	0.62	12.2	2.2	2	23	352	373	351	373	0.96
5	9	0.00031	0.05	15.7	0.3	1	23	378	401	378	401	0.96
6	9	0.97	1.5e+02	4.7	0.9	2	23	407	429	406	429	0.93
7	9	0.0025	0.4	12.8	3.3	1	23	435	458	435	458	0.97
8	9	1e-05	0.0016	20.4	2.4	2	23	464	485	463	485	0.98
9	9	4.8e-07	7.6e-05	24.5	1.8	1	23	491	513	491	513	0.99

Sequence Information

Coding Sequence: atggatttaaattatgttgaaATTCCCGTTTCCACTCCTAATATATGCCGATGTTGTTTATCAGCCAGCGGCAGCTGCGATATGACTATTGCTTATGAATCTGAAGCCGGAATTAAAGAAGTTTATCATGATATGTTACAAGAATGCTTTGGAATATCTCTCAAGGAATGGGGCCCCAGTCAGAAGGTGTGTGGCTTTTGCATTGCTCAACTGCGACTCTCCAGTGATTTCAAAAAACAGGTGTTACAGTCCGAAAGAAATTTCAATCTCCATTATGTTGAGAGGACAGtaTCTAAAAAACTGGAGGCTTTTAATAATCTACCTGTTAAAACTGGTAGGAATAAAATGTCTCcgtatataaatcaaatcgGTATTAGAAAGAGAAAGCGAAAGAAAACTACAATATTGAAGACAGTTCAAACCGAATCAGAGTTTTCCAATACTAAATATGATTCAGACACTCCAATCGCAGAATTCGtgaaaatgtattcaaataaagtaatagatgataaagaatataaagcGATACCCAAAAGtgaattaaatgaaacgaAGAATCCCAAAGACCAGTTggatgatgatgCACAGAAATATATAGGTAAAAATcctattaaacaaatatcagaAAGGAAACGTGTGAAGTTGACGTGCGGTACGGTGTTAAGAGACACCACCGCGTGCCCTTTCAGACACCACAAGAGCTGGTTCCAGTGCTTCTACTGCTTCCAAGATTTCATGGAGGTCAATCCTTTAAGAGATCACACTTTGAAGCTCCACCCGGACGTCGACGCGGAGCTggacaaattaaaaagctaCCCGCGATCTTTACAGATCGACATTTCGAATTTGAAATGCCGCCATTGCGGCTTGACATTGACAGACGTCAGCGAAATGTGCAGCCACTTCCAATCGGTGCACGACCAGAGGATCTACGGCGAGTGCATCGCCGACTACAAAGTTGATTCCAGTCCTTACACATGTCACATATGCGGGCGAGAGTTTCACGTATTCAGAACTTTAACAACACACCTGAACGAGCATTACGCGAACTGCATATGCGACGTATGCGGCAAATCCTTCCTCAACACCAGACGCCTGGAGGTGCACAAGCGGACCCACGAGCGTGGCAACTATCCGTGCGGCAAGTGCGGCAAAGTGTTGAAGACGAAGACTTCGAAGGCGAACCACATGGAGAGCGTGCATTCTAATCGCGTGTTAAAATGTCAGATCTGTGCTAAACCTATGAAACACTACAACGACAGGATCAAGCACATGTCGGAAGCGCACAACATAACACACAACTTCAAGTGTCCGTTTTGCAGCCGCGATTACAAGATTAAACATTATCTGGCAACACACATCAGGCAGACGcatggaaataaaaacaagaagtGTACGGAGTGCGATATGGCGTTCATCACCAACCACGGTTTGAAGAAACACATGCTAAAGCATACGGGTGAGAAGCCGTACACATGCACCGTGTGCAGCAAGTCTTATGCGAGGAATTACACGCTGAGGGAACATATGAGGTCGCACGATGTTGCCAGACTATCGCGGAAttag
Protein Sequence: MDLNYVEIPVSTPNICRCCLSASGSCDMTIAYESEAGIKEVYHDMLQECFGISLKEWGPSQKVCGFCIAQLRLSSDFKKQVLQSERNFNLHYVERTVSKKLEAFNNLPVKTGRNKMSPYINQIGIRKRKRKKTTILKTVQTESEFSNTKYDSDTPIAEFVKMYSNKVIDDKEYKAIPKSELNETKNPKDQLDDDAQKYIGKNPIKQISERKRVKLTCGTVLRDTTACPFRHHKSWFQCFYCFQDFMEVNPLRDHTLKLHPDVDAELDKLKSYPRSLQIDISNLKCRHCGLTLTDVSEMCSHFQSVHDQRIYGECIADYKVDSSPYTCHICGREFHVFRTLTTHLNEHYANCICDVCGKSFLNTRRLEVHKRTHERGNYPCGKCGKVLKTKTSKANHMESVHSNRVLKCQICAKPMKHYNDRIKHMSEAHNITHNFKCPFCSRDYKIKHYLATHIRQTHGNKNKKCTECDMAFITNHGLKKHMLKHTGEKPYTCTVCSKSYARNYTLREHMRSHDVARLSRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01130348; iTF_01116018; iTF_01494617; iTF_01496097;
90% Identity: -
80% Identity: -