Basic Information

Insect: Atrophaneura dixoni
Gene Symbol: -
Assembly: GCA_018248015.1
Location: DWHX01000917.1:28122-33716[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 6.1e-05 0.0096 17.9 0.0 1 23 301 324 301 324 0.96

2 9 0.011 1.8 10.8 1.8 1 23 395 417 395 417 0.97

3 9 9.8e-05 0.015 17.3 2.4 1 23 421 443 421 443 0.98

4 9 0.0033 0.53 12.4 3.3 1 23 448 471 448 471 0.97

5 9 0.00057 0.09 14.9 0.4 2 23 479 501 478 501 0.93

6 9 5.9e-05 0.0093 18.0 1.6 1 23 507 530 507 530 0.98

7 9 9.6e-05 0.015 17.3 3.1 2 23 537 558 536 558 0.96

8 9 8.2e-07 0.00013 23.8 2.0 1 23 564 586 564 586 0.97

9 9 8.4e-05 0.013 17.5 2.4 1 23 592 615 592 615 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	6.1e-05	0.0096	17.9	0.0	1	23	301	324	301	324	0.96
2	9	0.011	1.8	10.8	1.8	1	23	395	417	395	417	0.97
3	9	9.8e-05	0.015	17.3	2.4	1	23	421	443	421	443	0.98
4	9	0.0033	0.53	12.4	3.3	1	23	448	471	448	471	0.97
5	9	0.00057	0.09	14.9	0.4	2	23	479	501	478	501	0.93
6	9	5.9e-05	0.0093	18.0	1.6	1	23	507	530	507	530	0.98
7	9	9.6e-05	0.015	17.3	3.1	2	23	537	558	536	558	0.96
8	9	8.2e-07	0.00013	23.8	2.0	1	23	564	586	564	586	0.97
9	9	8.4e-05	0.013	17.5	2.4	1	23	592	615	592	615	0.97

Sequence Information

Coding Sequence: atggACCCGGTTAATATATGTAGATGTTGTATGGCAGAgggttttcataaaaatttaaattcgttaaattcatatttagaTAACAAGGGGACTTATTCGGATATGTTACAGGAATGTTTTGATATTGtaCTGTCCACAAATCAAATGTGCAATTTAATCTGTGATGTGTGCATCAAGAGTCTACACAGCTCACTATGCTTCAAGAGGCAGGTGTTGAAGGTTGAACTTGATTTCATTAAGTGGATGAAGCGGAAACATGAAAATGATAACATAATGACATTTAAAGATGAACCGAAAgctgatgaagatgaagactCGGAATCTGACAATTACTTCATCTGTGAAACGGTAAATGATACATCTCCGAGTAGAACTAAAAGGAAAGTTCATCCAAAGCGGAGGCTGAAAGTGTCAACAAAGAAGGAGACAAAAGATGATATATTTAAGACTGATGTGAATTTAATCAATGAGCTGATCGaCAAAAAGTATGTAGAGGTGAAAGTGGAGCCGAAACCTGAAGGCGACGGCGACGACAATTATTTGAGTGATTCAaTAAAACAAACAGATAAGATCACGAGCTCAAGGTTAGAAGTAAAGCGTAAAGTTAGAACCAAGAAGCAGAAAGGTGATCGGAGCTGGCGAGCGAAGAAGATCAAAACATTAGTTAACAAGCTGGCCAGTTCTTTAAGTTCCTGTGAAATGGGCGACTTAGAAGTGGACGAGAAGATCCACTTAAGGAAAAGTAGAAAGAGGAAAATCACCATATCGCAGAAGGAATCCAATATAGACCTCATGTGGAGCTCCCGGGGAGGCACAGAAAAAGCGAAGCACAGAGAGAACCTCCAGACTATACTGGAGCACAGTAACGCCATCCCATTCAAAAATAAGTCCCTTCTCGGCTACGTGTGCGGGTACTGCGACAACACATTCCCTGATCCGGCAGACCTGAGAGCGCACACCGGCACCAAGCACCAAGTGGATCGTTTGAAATTCAAATCCAACTTCGATATGTCAGAATACAACGTGAAGTTGGATGTCACGGGCCTGCTGTGTTCACTATGCAACCAGGTGATGCTCGACTTGACAGCCCTGAAGGATCACCTGGTCAAAAGCCACGATAAGACCATACACACTGACATAAAGGACCACATACAGCAGTTCAAGCTTAGGAAGGGCGAAGTTTACGACTGTGTAATGTGCAGCTCCACGTACGAAACCTTCAAGATGCTGAAGCAGCATATGAACAAGCACTATAATAACTACACGTGCAGCAAGTGCCACTCCTCGTTCGCGACTAAGAGGTCCCTCAACGCGCACCGGGCCATCCACCAAGAGGGGAGTTTTAAATGTGACAAATGCGAGAAGATCTTCACCAGCAGAGCGAAGAGGCAGTACCATGAGAAGACGAAACACCTCGGCGCGAGGAACATCAGCAGCTGCCCGTACTGCGGCCAGCCCTTCCGGAGCTACTACCAGCGCAACCAGCACTTGGTTAAAGTCCACAACACCGAGGCACAGTACAAGTGCAATGTGTGCAGCAAATCCTACATACTCAAATCGTTGCTCATGTACCACATAAAGAAGAGTCATTTGATGGAGAGGAACTGCCAGTGCAGCGAGTGCGGCTTCAGGTTCTTCAGCAAAAAGGCGCTCAAAGCGCACATGGTGAAGCACACGGGCAAGAGGGTCTTCGCGTGCGAGGTCTGCCACAAGTCATACGCACGGAAGTACACCCTGAGGGAGCACATGAGGATTCACAACAACGACAGGCGCTTCAAATGCGACGTTTGCAACGCGTCCTTCGTGCAGAAGTGCAGCCTGAAGAGCCACCTGCTGTCCAACCACGGCATTAGCTTGTCAGCCAGCGACATAACCTCAACTTAA
Protein Sequence: MDPVNICRCCMAEGFHKNLNSLNSYLDNKGTYSDMLQECFDIVLSTNQMCNLICDVCIKSLHSSLCFKRQVLKVELDFIKWMKRKHENDNIMTFKDEPKADEDEDSESDNYFICETVNDTSPSRTKRKVHPKRRLKVSTKKETKDDIFKTDVNLINELIDKKYVEVKVEPKPEGDGDDNYLSDSIKQTDKITSSRLEVKRKVRTKKQKGDRSWRAKKIKTLVNKLASSLSSCEMGDLEVDEKIHLRKSRKRKITISQKESNIDLMWSSRGGTEKAKHRENLQTILEHSNAIPFKNKSLLGYVCGYCDNTFPDPADLRAHTGTKHQVDRLKFKSNFDMSEYNVKLDVTGLLCSLCNQVMLDLTALKDHLVKSHDKTIHTDIKDHIQQFKLRKGEVYDCVMCSSTYETFKMLKQHMNKHYNNYTCSKCHSSFATKRSLNAHRAIHQEGSFKCDKCEKIFTSRAKRQYHEKTKHLGARNISSCPYCGQPFRSYYQRNQHLVKVHNTEAQYKCNVCSKSYILKSLLMYHIKKSHLMERNCQCSECGFRFFSKKALKAHMVKHTGKRVFACEVCHKSYARKYTLREHMRIHNNDRRFKCDVCNASFVQKCSLKSHLLSNHGISLSASDITST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00249907; iTF_01130244;
90% Identity: iTF_00249907;
80% Identity: -