Basic Information

Insect: Atrophaneura dixoni
Gene Symbol: -
Assembly: GCA_018248015.1
Location: DWHX01004291.1:10307-12906[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.19 30 6.9 1.1 5 23 348 366 347 366 0.97

2 11 0.01 1.6 10.9 0.2 3 23 374 394 372 394 0.94

3 11 2.6 4e+02 3.4 0.5 2 23 402 423 401 423 0.86

4 11 8.3e-07 0.00013 23.8 0.9 2 23 428 449 428 449 0.98

5 11 0.0029 0.46 12.6 4.3 1 23 455 477 455 477 0.98

6 11 0.00027 0.042 15.9 0.2 1 20 481 500 481 502 0.94

7 11 0.00011 0.017 17.1 0.2 1 23 535 558 535 558 0.95

8 11 6.7e-05 0.011 17.8 0.3 1 23 580 602 580 602 0.98

9 11 8.1e-05 0.013 17.5 4.6 1 23 608 630 608 630 0.98

10 11 0.0028 0.44 12.7 0.3 3 23 638 658 636 658 0.98

11 11 2e-05 0.0031 19.5 0.8 1 23 664 687 664 687 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.19	30	6.9	1.1	5	23	348	366	347	366	0.97
2	11	0.01	1.6	10.9	0.2	3	23	374	394	372	394	0.94
3	11	2.6	4e+02	3.4	0.5	2	23	402	423	401	423	0.86
4	11	8.3e-07	0.00013	23.8	0.9	2	23	428	449	428	449	0.98
5	11	0.0029	0.46	12.6	4.3	1	23	455	477	455	477	0.98
6	11	0.00027	0.042	15.9	0.2	1	20	481	500	481	502	0.94
7	11	0.00011	0.017	17.1	0.2	1	23	535	558	535	558	0.95
8	11	6.7e-05	0.011	17.8	0.3	1	23	580	602	580	602	0.98
9	11	8.1e-05	0.013	17.5	4.6	1	23	608	630	608	630	0.98
10	11	0.0028	0.44	12.7	0.3	3	23	638	658	636	658	0.98
11	11	2e-05	0.0031	19.5	0.8	1	23	664	687	664	687	0.96

Sequence Information

Coding Sequence: ATGGAAGCGTGGGCAAATTTGTGTCGTTGTTGTCTATCACCTGAAGCCGATGTGTCATTATTAGACACCACACAAAATGTGAACAACAAATTCTTTGACATAACAACAGTAGAAGTAAATGAAGACGATGGGCTACCACAGAAGCTTTGTAGTGATTGTTATTCTATATTAGTCACAGCTTATCAATTCCGTAAACAATGCATCAAAATGAACAAAGAGTTAAAACTCCaattaaacactttattaacacaaaatcaaaatgaGGAAGATGAACAAAGGCAAGAAGATGCTTCTGATGACATTGATGAAGATCCCATAAAACAACTgcagaaaattattaagtctGAACCAACAGAcagtgatgatgattactATTATGTTCTTGTCATAGATGATCCAAAAGACAAAGAACCTGATATTGAAGAACAtgtaacaaaagttaaaaccGAAGATACCTACAGCGGACCATGTGAAAGTGAACCGACAAATATAGAAGAGGAATGCCATACAAGAGATTCAAACTTTGAAAATTCCATAGAATCATTTCTATTATCAAATTCAAAAGTTTCAGACAGTGTACCAGCAACAATACTCGAAAATGAGGAGAGCCAAGACACTGATAATAACTTCCAAACTATGGATATGGATGAAACACAACATTCTTCTCAGGAACTTATCCTACCACAAATTATTGAAGCCCAAGATTCAGTTGAACTGGAGAATAATTCTAATGAAGCGACCATAAGTAACATTGTTGGACAATTCCCAAAAAATACCAACTTGATTAAAATACTTACTGCTTCAGGAAATGAACAAACTATTATGTTGAAAAGTGAAGATGGCAAATACTTGTCTAACTCgcaattaatttctattgaaGATGGTGATGGTATGTCACAAGAAGAGGTCATCTTTTGTGAAGGTGATGATGAATCACAATTCCAAATCTTAAAATGTGATGGCTCAGAGCTGGTTATAGAATATGCAGATGACAGTCAAATCACAACTGTGTTACAGCAGGAAGATGGTACATTAGTATGCGATTGTGGTGAACAGTTCCAATATTTGGCAGATTATGAGAAGCATCAACATAAACATAATCCAGCTGGTGAACACCTTTGCAATCTGTGTGGGAAAGGATTTGAAACATCGGAGATTTTAATAGGTCACATGTTACTCCACAGTGTTACGGGCCAACTAGTTACTTGTCCATTCTGCAATCAGCTCATAAAACGCAACTCACTGACTCAGCATATTAAATACggtcataataataaaccacGTTGTGACATATGTCTTAAAACGTTTGccaatcaaaataatttaaaacgtcaTATGATGATACACAGCGATATAAGAGAGTTTGAATGTGACATTTGCTTCAAAAGATTCCATCAGAAGATAACAATGCAGACGCACAGATTAACCCACATGAATCCTTTTTCGTGCAGCAGGTGTGACAGAACTTTCGAGAACAGGGAGACTTTGATAGCTCATCGTGAATCAGATGAATGTACAAAGACCAAAGTGATGAAAGCCAAAGAGGAACTGATGAAAACTGTCAAACAGGAGATCACAACGAATTTCGGAAAAGTAATAGGCTACGCTTGTTCACTTTGTAAGAAAATGTTCTCAGTCGAGTCCGCATTAGAACAACACATTGAGAACACACACATAGTAGACTCGAATGAGGGCACGGAGACGGATAAGAATTTACGAGGTAAAAACGTGAAGAGGTTTGAGTGCAGCGTGTGCGGGAAGAACTGCGCGAGTCAGGCGATGCTGATCATGCACGAGAGGGTTCACACTAACGAGAGGCCCTTCCCTTGCCAGTTGTGCACTTTGagattcaaaacaaaaacacaccTACGGACTCACCAACTCACTCACACTCGGGAGAAGAAGTTTGGATGCTCTGTATGTATGAAATTCTTTGCTTTGAAGGGTAATTTGGTTGTACACCTACGCACACACACAGGTGAGCGCCCATACGTGTGCTCGTTGTGCGGCGAGGCCTTCATAGACTCGAAGTATCTCAAAAAGCACAAGTTAAAGAAACATGCAATTGATAATGTGCCTTACaacaaatattga
Protein Sequence: MEAWANLCRCCLSPEADVSLLDTTQNVNNKFFDITTVEVNEDDGLPQKLCSDCYSILVTAYQFRKQCIKMNKELKLQLNTLLTQNQNEEDEQRQEDASDDIDEDPIKQLQKIIKSEPTDSDDDYYYVLVIDDPKDKEPDIEEHVTKVKTEDTYSGPCESEPTNIEEECHTRDSNFENSIESFLLSNSKVSDSVPATILENEESQDTDNNFQTMDMDETQHSSQELILPQIIEAQDSVELENNSNEATISNIVGQFPKNTNLIKILTASGNEQTIMLKSEDGKYLSNSQLISIEDGDGMSQEEVIFCEGDDESQFQILKCDGSELVIEYADDSQITTVLQQEDGTLVCDCGEQFQYLADYEKHQHKHNPAGEHLCNLCGKGFETSEILIGHMLLHSVTGQLVTCPFCNQLIKRNSLTQHIKYGHNNKPRCDICLKTFANQNNLKRHMMIHSDIREFECDICFKRFHQKITMQTHRLTHMNPFSCSRCDRTFENRETLIAHRESDECTKTKVMKAKEELMKTVKQEITTNFGKVIGYACSLCKKMFSVESALEQHIENTHIVDSNEGTETDKNLRGKNVKRFECSVCGKNCASQAMLIMHERVHTNERPFPCQLCTLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCSLCGEAFIDSKYLKKHKLKKHAIDNVPYNKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115886;
90% Identity: iTF_00249894;
80% Identity: -