Basic Information

Insect: Atrophaneura dixoni
Gene Symbol: rst2
Assembly: GCA_018248015.1
Location: DWHX01001522.1:2887-9649[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0079 1.3 11.3 0.1 3 23 134 154 132 154 0.97

2 15 0.0027 0.43 12.7 2.9 1 23 256 278 256 278 0.98

3 15 9.6e-05 0.015 17.3 1.2 1 23 284 307 284 307 0.96

4 15 0.021 3.3 9.9 5.8 1 23 312 335 312 335 0.90

5 15 1.1e-05 0.0018 20.2 0.4 2 23 490 511 489 511 0.98

6 15 0.0002 0.032 16.3 2.4 1 23 517 539 517 539 0.98

7 15 0.013 2.1 10.6 3.6 1 23 595 617 595 617 0.96

8 15 1.1 1.7e+02 4.5 0.0 2 23 625 646 624 646 0.91

9 15 0.00069 0.11 14.6 4.2 1 23 652 674 652 674 0.98

10 15 4.4e-06 0.0007 21.5 0.4 1 23 680 702 680 702 0.98

11 15 0.0011 0.17 14.0 2.5 1 23 711 733 711 733 0.98

12 15 0.00024 0.038 16.0 1.2 3 23 780 800 779 800 0.97

13 15 0.028 4.5 9.5 7.3 1 23 817 839 817 839 0.96

14 15 1.9e-06 0.00031 22.6 0.6 1 23 845 867 845 867 0.98

15 15 5.6e-07 8.9e-05 24.3 3.1 1 23 873 896 873 896 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0079	1.3	11.3	0.1	3	23	134	154	132	154	0.97
2	15	0.0027	0.43	12.7	2.9	1	23	256	278	256	278	0.98
3	15	9.6e-05	0.015	17.3	1.2	1	23	284	307	284	307	0.96
4	15	0.021	3.3	9.9	5.8	1	23	312	335	312	335	0.90
5	15	1.1e-05	0.0018	20.2	0.4	2	23	490	511	489	511	0.98
6	15	0.0002	0.032	16.3	2.4	1	23	517	539	517	539	0.98
7	15	0.013	2.1	10.6	3.6	1	23	595	617	595	617	0.96
8	15	1.1	1.7e+02	4.5	0.0	2	23	625	646	624	646	0.91
9	15	0.00069	0.11	14.6	4.2	1	23	652	674	652	674	0.98
10	15	4.4e-06	0.0007	21.5	0.4	1	23	680	702	680	702	0.98
11	15	0.0011	0.17	14.0	2.5	1	23	711	733	711	733	0.98
12	15	0.00024	0.038	16.0	1.2	3	23	780	800	779	800	0.97
13	15	0.028	4.5	9.5	7.3	1	23	817	839	817	839	0.96
14	15	1.9e-06	0.00031	22.6	0.6	1	23	845	867	845	867	0.98
15	15	5.6e-07	8.9e-05	24.3	3.1	1	23	873	896	873	896	0.98

Sequence Information

Coding Sequence: ATGAATTTGAATATTGTTGTGGAGTTAGATCCGTTGGGAACGTATGATTTTCCAGCATTCCAAAATTTCACACCTCTGCTCATTCCTATAGAATATCCAAACACCAATACAACATACCAGGACAATGTAAAAAATGAAGCATACCAATATCCAACAACATTGAACGGGTTTAATTGtgtaacaaataatgttaatgaaataaaacctGTAGTTCCCGAAGAAACAAATGATGtgaataacataaatgtaaatgttaataatgaaccAATTGAAGAAAATCGTAATGATGACCCCACaccaacaaataaaacaattaaaaaagaatccAAAAGTGGGAAAGACAAGAAGACCAATAATCTCTCGGAGAAGATCGCTGATAGCAATTTCCCTTTCTACGGCTGTGCAGTTTGTAATATTAGCTTTAAGTTATTGACGGATTTAGATAAGCACATAGCAACGCATAAAGATAGGATAACGAGTTACGGTTTGAGGTTGAAGAATCAAATGAAGAGGAAGAAGTTACGCAAGGAGCAGAAAAAGttgaagaaattaaagaaatcaattaagAAGGAGAAGGAtcttgaaatgaaaatggaaaTCAAACCTGAAGACGGCTACATTGGTGATATGAAAGTGGAGGAATATAAAACTGATTCCAAAGATAGCAAAACTAATAAACTGGAAATTACAGCACTTGTTACAGAGAAAGAggaagttaataaaacagcGGATGAGACAGAGAAGGACTATAATTTGGAGAagatgtttaaatgttttgcatGTCAGAAGCAGTTTACTTTAAGTTACTACCTGAAGTTACACGTTAGATCTCACACAGATGAGAAACCTTATACATGTGCGGAATGTGGACAATGTTTCATAACTGCCAGCAAACTGGGACGTCACAACAAGAGGATACACCTGGCCATCCGTCATCAATGCAGGATCTGTTATAAATTCTTCTCTAGATTCGAATACCTCACCAAGCACTTCGACAACAAGCATCCGGAGGATAAGTTGGAAGGTGAACCATACGACTATAACGCAATCCTGCCGTACCTGAAAGAGCTGGAGGAACAGATACAAACTAAAACAGAAGAGCAAACGGGCGAGCAAGAAGTTAAAAGCAATACGGAGAACCTGTGGGACGACTGGCCAACTGAACAGCCCCACATCAGTTACGTCGCTGAACCGATCGAAGTGGGAGACGAGCCCCTCATAGACGTAAAAGCTGGCGATGAACCTTCAATAGACGACCTGATTGTACCAAAGGACCTGGATGCGGAAGTGAAGAACGAGGTTGAACTGGATGGCTACTTGTCGGACAATCTCGATAGTAAGGATTGCATGAAAAATGACAGCTGCTCAGACAGCGACTACTTCCCGTCCAACACGTGGGCGTCGTCACCGAAGCCGATGGACGACCCGGCGCCCCAGCGCAAGCGGCAGAAGGCTGACCACCCGATCAAGTGCGAGGTCTGCGAGAAGGAGATCAGGTCGCAGTCATATCTGCAGATACACATGCGGACCCACACCGGAGAGAAGCCCTTCAAATGCTACATCTGCAACCGGGGCTTCATCACGGCTAGCAAGATGCACCGGCACGTGCTCACGCATTCTGTCGACGTTGATGATAAATCAGCTGTTAAAGCGGAGATGACCTCAGAATCCGGTTCTGATACAGCGAAGAAGAGAAGGAGGCGTAAAAAAGAATCAACGAAAAAAAAGACCAGGTGTGTGAAACCGAAAAGGGCGGACAAGACGCGCCACCAGAAGAGGCCGCACGCGTGCGAGTACTGCCAGAAGCGGTTTCTCCACCTGGCCACCCTGCAAGTCCACAAGAGGTCGCACGAGGGCGAGGAGCTGGTGCTCAAGTGCAACTACTGCCTGATGAGGATCGACGACGCGGAAGCGCTGAGGGTGCACGAGGCAGGACACGAGGGACCGAAGCCCTACGTTTGTACGATATGCGGGAAGAGTTACAAGAAAAGGGAGACCATGATGTACCACAGAAAGCACCACAGCGCCGACAAGGAGTTCACGTGCGACATCTGCTCCAAGGGCTTCCCCACGTCGCGGAAACTGGAGAAACACATAGCTACGCACCGCACGGACCGGTACGTGGTGCGGTACGAATGTCCGGTCTGCGCGCACATGTTCAACACCAAATACCACATCAAGATGCACCTGGCGACGCACCAAAAGGAAGGCTTGATAGTGGAAGAGAACCGAAATGAGATCCTGGCCATGGTACTCCAGAACGCGCGCAGGATACCAAAACACCCGGACGCGGCCGGCATCACGGATAAAGTACCACAGGACGAGCAGAGCCGCATGTGCAACATATGCGGGCAGGTCTTCCAGCACTTCTACTACTTGGAGGAGCACCTGAAGAGCCACGGCTCCAAAATAGCACTGGAGGACGACGAGAGAAATGAGGAGAAGAAGCACACTTGCCAGGTCTGCAACAAGAGCTTCAAGTTGCACTACTACCTCAAGCTTCACAGCTTCACCCACACCAAGGAGAAGCCGTACATCTGCCAGCAGTGCGGCAAGGGCTTCATAACCAGGGGCAAGCTGAAGAGGCACCTGGAAACCCACACGGGGCTGAAGAAGTACCAATGTCATATCTGTTACAAGTTCTTCACGAGACCTAGTTACCTAAGAATACACGTGCGGACTATTCACGGCACCCAGGACTACAACTTCACACTTGATAAGCAGTTCGGGGTTGGCAGTTTAACTGGTGTACGGCAGACAGTTTAG
Protein Sequence: MNLNIVVELDPLGTYDFPAFQNFTPLLIPIEYPNTNTTYQDNVKNEAYQYPTTLNGFNCVTNNVNEIKPVVPEETNDVNNINVNVNNEPIEENRNDDPTPTNKTIKKESKSGKDKKTNNLSEKIADSNFPFYGCAVCNISFKLLTDLDKHIATHKDRITSYGLRLKNQMKRKKLRKEQKKLKKLKKSIKKEKDLEMKMEIKPEDGYIGDMKVEEYKTDSKDSKTNKLEITALVTEKEEVNKTADETEKDYNLEKMFKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAECGQCFITASKLGRHNKRIHLAIRHQCRICYKFFSRFEYLTKHFDNKHPEDKLEGEPYDYNAILPYLKELEEQIQTKTEEQTGEQEVKSNTENLWDDWPTEQPHISYVAEPIEVGDEPLIDVKAGDEPSIDDLIVPKDLDAEVKNEVELDGYLSDNLDSKDCMKNDSCSDSDYFPSNTWASSPKPMDDPAPQRKRQKADHPIKCEVCEKEIRSQSYLQIHMRTHTGEKPFKCYICNRGFITASKMHRHVLTHSVDVDDKSAVKAEMTSESGSDTAKKRRRRKKESTKKKTRCVKPKRADKTRHQKRPHACEYCQKRFLHLATLQVHKRSHEGEELVLKCNYCLMRIDDAEALRVHEAGHEGPKPYVCTICGKSYKKRETMMYHRKHHSADKEFTCDICSKGFPTSRKLEKHIATHRTDRYVVRYECPVCAHMFNTKYHIKMHLATHQKEGLIVEENRNEILAMVLQNARRIPKHPDAAGITDKVPQDEQSRMCNICGQVFQHFYYLEEHLKSHGSKIALEDDERNEEKKHTCQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITRGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFTLDKQFGVGSLTGVRQTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115857;
90% Identity: -
80% Identity: -