Adix007524.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Atrophaneura dixoni
Gene Symbol
-
Assembly
GCA_018248015.1
Location
DWHX01001872.1:18694-25078[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.016 2.5 10.3 0.5 1 23 84 107 84 107 0.94
2 26 1.2 1.9e+02 4.4 0.0 2 23 134 156 133 156 0.90
3 26 0.055 8.7 8.6 0.8 2 23 180 201 179 201 0.96
4 26 0.31 49 6.2 0.0 1 23 205 227 205 227 0.88
5 26 0.011 1.7 10.8 3.0 1 23 232 255 232 255 0.96
6 26 0.21 34 6.8 1.0 2 23 263 285 263 285 0.90
7 26 2.5e-05 0.004 19.1 0.5 2 23 293 315 292 315 0.96
8 26 0.0059 0.93 11.7 3.6 1 23 321 343 321 343 0.97
9 26 2.4e-06 0.00037 22.4 2.5 1 23 349 371 349 371 0.98
10 26 0.00015 0.023 16.7 4.3 1 23 377 400 377 400 0.98
11 26 0.0055 0.87 11.8 4.2 1 23 421 443 421 444 0.95
12 26 0.0026 0.41 12.8 1.7 2 23 516 537 515 537 0.97
13 26 0.00018 0.028 16.4 0.0 1 23 541 563 541 563 0.97
14 26 0.0045 0.71 12.0 1.1 1 23 568 591 568 591 0.94
15 26 3.9e-06 0.00061 21.7 2.2 2 23 625 647 624 647 0.96
16 26 0.0073 1.2 11.4 1.4 2 23 654 675 653 675 0.96
17 26 0.0069 1.1 11.4 0.5 1 23 751 774 751 775 0.95
18 26 0.038 5.9 9.1 0.1 2 23 800 822 799 822 0.94
19 26 0.14 23 7.3 2.2 2 23 845 866 844 866 0.96
20 26 1.1 1.8e+02 4.5 0.0 1 23 870 892 870 892 0.83
21 26 0.078 12 8.1 5.0 1 21 897 917 897 920 0.92
22 26 0.089 14 8.0 1.0 2 23 928 950 927 950 0.93
23 26 0.00053 0.084 14.9 0.9 2 23 958 980 957 980 0.96
24 26 0.0059 0.93 11.7 2.0 1 23 986 1008 986 1008 0.97
25 26 2.4e-06 0.00037 22.4 3.1 1 23 1014 1036 1014 1036 0.99
26 26 3.5e-05 0.0056 18.7 1.5 1 23 1042 1065 1042 1066 0.96

Sequence Information

Coding Sequence
ATGGTGGAAAAATATAGTGTCAAGAGACGTGCGAGAGTGCTAAGTGTGCGCCGCCGTACGGTAAGCGTGAAATTAGAAAGGGAATCGTCCAAAGAGTTGAGTAATGGCGAGGAAAACGCGGTGACCAGGGTGGGAACTGGTGAAACTGATAGGTACAAGGGGCGGGAGCTGGAGAAGCACCGCACCAATATCAGGGAGATATTGCAGTGCTCCAACGCTACCCCGATCCGCTGCCACGCCGGTATCGGATACGCCTGTTGTTTCTGTCCAAACCAGTTCCCGGACCCTAAGGACCTGAAGGCGCACACTCTGCTCGATCACGACGATAAAGCTAAGCGCAACTTCATGGAGGGCAAAATGATGTTCTCCTACATCGTGAAACTGGATGTGACCTGTCTGAAGTGCGCTCTGTGCGGAATGGGATTGTCATCGTTGGAACTACTGATCGGGCACCTGGTGAATGTTCACGACAGGAAGTTTTACTCGGACATCAACAATCACATAGTGCCGTTCAACTTCGACAGCGACGCGGTGCTGAAGTGCGTTTACTGCATGAACTCGTTCAACAAGTTCAAAGCGCTCCAGGAGCACATGAACGTGCACTACAGGAACTACGTGTGCGAGGTCTGCGACGCCGGATTCGTCAACAGGAACATACTCCTCAACCACGCCGAAGGTCACAAGAAAGGCACATTCAAGTGCGACTTTTGCGACAAAGTCTTCGACACGTACCGGAAGAAGAAGTCGCACGAGAAGTCGGTACACATACACCTGAACATGTTGAACAGGTGCGGCTACTGCAACGAGAAGTTCAAGGACTACAGGAAGAAGCTCGTCCATCTGGTCAAAGTCCACGGCGTCCGTTCAGCTAAGATAAAATGTAAGGCATGCGACAAGACCTTCGAGACGCAGACGGCGTTGACGATACACATCAAACGCGACCACCTGTTGGAGAGGAGGCACGAGTGCAAGATATGCGACATGAAGTTCTTCGTTACACACGAGCTGAAGGAGCACATGGTGAAGCATACCGGCGCAAGGAATTTCGAGTGCGAGGTCTGCCACAAGACGTACGCGCGGCGGAAGACGCTGAGGGAGCACATGAGGATCCACGCGGACGACAGGCGGTTCAAGTGCGAGCACTGCGGGCAGGCGTTCGTGCAGAAGTGCAGCTGGAGGGGGCACATGAGGTCCAAGCACGGGGAGCAGATACTTAAATGGTCTAACGCCACACCGATAAGAGGTAAAGGTGGCCGAGGGTACTCATGCTGCTACTGCACCAGCGAATTCACCAACCCGAACCAGTTGAAAGCTCACACTGCATCCCATCACACCGGTGTTGCCAGTGCAAGCTTCATGAAGCGCGATGATCTAGGCGCTTATTACGTAAAACTAGATATAACTGATCTCCGTTGTACAATATGTGATGATGAAATGGCGGTGCTCGATCAGCTGTTCGATCACTTAACAGATGTACACAACAAACATCTTTATAAAGACATCAAATGTCAGATGATGCCTTTCAAATTCTATGGGGACCGTCTCCGGTGTTTCATCTGCCGGAACGAGTTCAGCAGGTTCAAGAGTCTACTGGAGCACATGAACACACACTGCGGGAACTACGTATGCGATGAATGCGGCGCgggttttattaataagaaggGGCTCAGAGTGCACAGCAATGTGCACAAAATCGGTCAGCACAAATGCGAGCTCTGCGGGAAAGTATTCGATACAATACAGAAGCAGAGAGCTCACCGAAAAGCTGTGCACATCCACGGGAATTTGCTCAACAAGTGCGACAAGTTTGTTAACCAACAAAAGAAGGAGCGTCACTTATCAGAAGTGCACGGCGTTGACGTTACACCGATTAGATGTAAAGCGTGCGATAAAACTTTCACGAGACAGAGTTCGCTGAACGCGCACAAAAGGAGGCGCCATTTAATGGAGAAGGACCAGGTTTGTAGTTTTTGTGGGGCGCGGTTCTTCGGGAAGAGCTGCTTGATGGTGCACATGGTGAAGCACGGCGAGAAGGAGCTCCAGTGCGGAGgTACTGCCCGTACCACCAAATCGGAAACGAAATTAGACAAAAATATGACAGACGAAAAGGAACATGATCCAGACGTAGACGTAGGCGCAGACAAATCTAAAGTTAAAAGGGGACAAGAATTATCGAAACATAGAAAGAACATGAGGGAGATACTAGTGAACTCAAATGCAACGCCGATACGTTGTCACGGCGGGAAAGGGTACGCGTGCAGCTTCTGCGATGATCAATTTCCGGATCCGGCCGATCTTAAAAAGCACACCATCAGCTCCCACCACAGCAACGTAATCAAATTCATGAAAGGAAAGGACCTGTACAGGTTCCACGTTAAGTTGGACATAACGGACCTGCGCTGCAGGATTTGTGACAGCACCATCACCAATTTAGAACAGCTCATCGACCATTTGCGCGACGCTCACAAAAGGACCATGCACAcggatattaaaaatcaaattttaccATTCAAATTCGACGGCGAGAGTTTAAGATGCTTCATGTGTTTAAACAAGTTCAACAAGTTCAAGACACTGCAGGAGCACATGAATATACACTACAGGAACTACATCTGCGAGGTGTGCGACGCGGGGTTCGTGAACCGCGGGATCATGATCCAACACTCGGAGAGTCACAAGTACGGGACATTCACCTGCGACCACTGCCCCAAAGTCTTCAACACGTTAAGGAAGAAGAAGTCGCACGTGAAGTGCATACACACACACTCgaatatgttaaacaaatgCGGGTACTGCAGCGAGAAGTTCAAGGATTACCGGAAGAAGGAGATACATATGACGGAAGTGCACGGACTGCCGACCCAGCCGCTGAAGTGCGAGGCGTGCGAGAAGACATTCGTTGGGCAGAAGCACCTGAGCGTGCACATAAAGAGGGTACACCTGTTGGAGCGCCGTCACAACTGCTCGGAATGCGAGATGAGGTTCTTCTCAGTGTCGGAGATGAAGATACACATGCTGAAGCACACCGGTGAACGGGACTTCAAGTGTTCGGTGTGCGGCAAGTGTTACGGGAGGCGGAGGACGCTGCAGGAGCATATGCGGATCCATGCTAACGACAGACGCTTCAAGTGCGAGCTGTGCGGGCAGGCTTTTGTGCAGAAGTTGACTTTGCGTTTGCACATGCGCGGGAAACATCACTga
Protein Sequence
MVEKYSVKRRARVLSVRRRTVSVKLERESSKELSNGEENAVTRVGTGETDRYKGRELEKHRTNIREILQCSNATPIRCHAGIGYACCFCPNQFPDPKDLKAHTLLDHDDKAKRNFMEGKMMFSYIVKLDVTCLKCALCGMGLSSLELLIGHLVNVHDRKFYSDINNHIVPFNFDSDAVLKCVYCMNSFNKFKALQEHMNVHYRNYVCEVCDAGFVNRNILLNHAEGHKKGTFKCDFCDKVFDTYRKKKSHEKSVHIHLNMLNRCGYCNEKFKDYRKKLVHLVKVHGVRSAKIKCKACDKTFETQTALTIHIKRDHLLERRHECKICDMKFFVTHELKEHMVKHTGARNFECEVCHKTYARRKTLREHMRIHADDRRFKCEHCGQAFVQKCSWRGHMRSKHGEQILKWSNATPIRGKGGRGYSCCYCTSEFTNPNQLKAHTASHHTGVASASFMKRDDLGAYYVKLDITDLRCTICDDEMAVLDQLFDHLTDVHNKHLYKDIKCQMMPFKFYGDRLRCFICRNEFSRFKSLLEHMNTHCGNYVCDECGAGFINKKGLRVHSNVHKIGQHKCELCGKVFDTIQKQRAHRKAVHIHGNLLNKCDKFVNQQKKERHLSEVHGVDVTPIRCKACDKTFTRQSSLNAHKRRRHLMEKDQVCSFCGARFFGKSCLMVHMVKHGEKELQCGGTARTTKSETKLDKNMTDEKEHDPDVDVGADKSKVKRGQELSKHRKNMREILVNSNATPIRCHGGKGYACSFCDDQFPDPADLKKHTISSHHSNVIKFMKGKDLYRFHVKLDITDLRCRICDSTITNLEQLIDHLRDAHKRTMHTDIKNQILPFKFDGESLRCFMCLNKFNKFKTLQEHMNIHYRNYICEVCDAGFVNRGIMIQHSESHKYGTFTCDHCPKVFNTLRKKKSHVKCIHTHSNMLNKCGYCSEKFKDYRKKEIHMTEVHGLPTQPLKCEACEKTFVGQKHLSVHIKRVHLLERRHNCSECEMRFFSVSEMKIHMLKHTGERDFKCSVCGKCYGRRRTLQEHMRIHANDRRFKCELCGQAFVQKLTLRLHMRGKHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-