Adix033450.1
Basic Information
- Insect
- Atrophaneura dixoni
- Gene Symbol
- cheC
- Assembly
- GCA_018248015.1
- Location
- DWHX01017528.1:428-1270[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-09 4.5e-06 27.9 0.3 8 40 2 35 1 38 0.86 2 2 2 5.8e+03 -1.3 0.0 35 44 99 108 97 109 0.87
Sequence Information
- Coding Sequence
- ATGGCATTGaatgcatataaaaatagcCAATATGAGAGCCTTCAAAAAGCAGCTTCAGCCTATGATGTTCCCAGAACAACCCTCCGACGCCGTATAGCAGGTATAGCTTCACGAGCTGAGCAGCCTGCTAATTGCCAGAAATTATCAAACACTGAAGAATCTACACTCTCAAAATGGATTCTGGATATGGATAAACGTGGTCTTCCTCTCCAACTATCAACTGTCCGCCATCTAGCCCAGCTCCTAGTCACTGCACGCTTACCGTCAACCACTATTGGAGAAAACTGGGTTAACCGCTATGTTCAACGCCACCCAGaattgaagtcaaaatatacCCGGAAATATGACTACCAGCGTGCTAAATGTGAGGATCCTAAGCTTATTCAAGCTTGGTTTACACGTGTTCAAGAGACAATCCAAAAGTATGGGATTCTGACGGAAGACATCTATAATATGGATGAGACCGGCTTTCAAATGGGTGTGGCTTCAACTGCTAAAGTTGTCTGTGGATCTGAGACAAGACAGAGTCATGCAAAAGCTCTCCAACCTGGAAATAGAGAGTGGGTGACTGCAATTGTTACTGTAAATGCAGTAGGACGGGTTTTACCTGCCCAAATCATCTTCGCTGCAGTGAAGCATCAATCTCTATGGTATCATGAGTTACCAGAAGATTATATTATCAGTGTCAGCAATAATGGTTGGACAACAGATCAGCTGTCACGGCGCCGCTCGCCGTTGATCTATCACAAGTACCATCACCGAACTATCACCTTGGCACCCTCTGCGCCGGCTGCCTGCCCTGCACTCTTTCGTTGCTTAACTGCTAGGCGAGTAGGTGGCTAG
- Protein Sequence
- MALNAYKNSQYESLQKAASAYDVPRTTLRRRIAGIASRAEQPANCQKLSNTEESTLSKWILDMDKRGLPLQLSTVRHLAQLLVTARLPSTTIGENWVNRYVQRHPELKSKYTRKYDYQRAKCEDPKLIQAWFTRVQETIQKYGILTEDIYNMDETGFQMGVASTAKVVCGSETRQSHAKALQPGNREWVTAIVTVNAVGRVLPAQIIFAAVKHQSLWYHELPEDYIISVSNNGWTTDQLSRRRSPLIYHKYHHRTITLAPSAPAACPALFRCLTARRVGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -