Adix034239.1
Basic Information
- Insect
- Atrophaneura dixoni
- Gene Symbol
- -
- Assembly
- GCA_018248015.1
- Location
- DWHX01018404.1:1-3394[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.9e-11 1.1e-07 33.0 0.0 4 39 85 121 84 125 0.90 2 2 4.3e-13 1.2e-09 39.3 0.2 2 39 137 174 136 177 0.93
Sequence Information
- Coding Sequence
- CGttgcccgccgccgcgcgcctcGCCCGACAGCCTCGAAACGCTCGAGCCGGCGCGCGCTGACACTGGCGCCACACTTCTGGACAGACATATAAAGATGCTGAACGCTAGCGAAGTGGAGTCCGACTTTGTCCCCCTGCTGGCGGTCAAGGACGAGCCCTTATCGGAAGGGGAGCAGCAGCAGTGCAGCGACGAGGCCAGCGAATGCTCCGGACCGGAGGCGCGCGGTAGCCCCAAGGGCTGGTCCGCGCGCGACATGGAGCGCGCGCTGCAGGCGCTGCGGGACCGCCGCATGAGCCTCACCAAGGCATCAGCTACGTACGGGATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGACGGCGCCGCCAAGAGCTGGAGCGACGGCGACCTGCGCGCCGCGCTGCACGCGCTGCGGGCCGGCGCGCTCTCCGCGAACAAGGCGAGCAAGGCGTACGGTATCCCGAGCAGCACGCTGTACAAGATCGCGCGCCGTGAGGGCATCCGGCTCGCCGCGCCGTTCAACGCCGCGCCGACCGCGTGGCGCCGCGGCGACCTGCAGCGCGCGCTCGC
- Protein Sequence
- RCPPPRASPDSLETLEPARADTGATLLDRHIKMLNASEVESDFVPLLAVKDEPLSEGEQQQCSDEASECSGPEARGSPKGWSARDMERALQALRDRRMSLTKASATYGIPSTTLWQRAHRLGIDTPKKDGAAKSWSDGDLRAALHALRAGALSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRGDLQRAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -