Basic Information

Insect: Athripsodes cinereus
Gene Symbol: -
Assembly: GCA_947579605.1
Location: OX388325.1:11119847-11122332[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8e-07 8.8e-05 24.2 1.5 1 23 205 228 205 228 0.98

2 10 0.00049 0.053 15.4 1.4 1 23 300 323 300 323 0.97

3 10 9.9 1.1e+03 1.8 2.0 1 23 350 372 350 372 0.97

4 10 6.3e-06 0.0007 21.3 1.8 1 23 378 400 378 400 0.99

5 10 1.5e-06 0.00016 23.3 1.8 1 23 406 428 406 428 0.98

6 10 0.0038 0.42 12.6 0.3 1 23 435 457 435 457 0.99

7 10 0.00017 0.018 16.9 0.2 1 23 463 485 463 485 0.98

8 10 1 1.1e+02 5.0 4.0 1 23 491 513 491 513 0.95

9 10 2.2e-06 0.00024 22.8 0.4 2 23 520 541 519 541 0.97

10 10 0.0067 0.73 11.8 3.7 1 20 547 566 547 570 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8e-07	8.8e-05	24.2	1.5	1	23	205	228	205	228	0.98
2	10	0.00049	0.053	15.4	1.4	1	23	300	323	300	323	0.97
3	10	9.9	1.1e+03	1.8	2.0	1	23	350	372	350	372	0.97
4	10	6.3e-06	0.0007	21.3	1.8	1	23	378	400	378	400	0.99
5	10	1.5e-06	0.00016	23.3	1.8	1	23	406	428	406	428	0.98
6	10	0.0038	0.42	12.6	0.3	1	23	435	457	435	457	0.99
7	10	0.00017	0.018	16.9	0.2	1	23	463	485	463	485	0.98
8	10	1	1.1e+02	5.0	4.0	1	23	491	513	491	513	0.95
9	10	2.2e-06	0.00024	22.8	0.4	2	23	520	541	519	541	0.97
10	10	0.0067	0.73	11.8	3.7	1	20	547	566	547	570	0.93

Sequence Information

Coding Sequence: ATGGATATCGAGGATTCTGCCATAATGAATTACTTATGTCGAATTTGCCTTTCGAAGGACTCTGTGGATTTAGTCTCATTATTTGATGATAATGTTTTACCAAATTTATCTCAGAAGATAATGTTTTGTACAAATTTAAAGTTATTTCCTATTCCTGGTTTACCAAATGAGATTTGTAAGTTGTGTTGTGATGTTCTTACAATAGCAGATAATTTTAGAAACAAATGCAGAGAATCTGATAATTTCTTACGTAAACTTTGTCCAGAGCGATTTATTCATGAAAATAAACTGAATACAAAAGAGTTTGAAGATGATATAGAATCTCAGAAGGAAACTAGTTCTGTACAGAAAGGTGAGAATTCTACAAACAAAATAACTTCAAATTTAGAACTTCTTCCATCACAAGAAAGAGCTTTTACTAAAAAAATAGATAATAATGATTTCTTATACGAAGTTCAAATCAAACAAGAAAATAATGAACCTTTTGAAATTGAGAATTCTGTTGAAGATGATTATTCCAGTGAAGATGAAAAAAGGCAAATTTTTAAAGATGGCAAGCAGAAATTGGACAAGAATAAAGATGTTTTGTATAATGAGGGTACAGATAAGATATTTAAATGTAGAAAGTGTGGTAAGTCATTAAGTAGTAGTAGTACATTGTCAAGACACATGAAGGTTATACATAGTGAGGAGAGAAATAAAGCTAAAGGAATTATCAAAAGTAGAACAAAGAATAGTAAATTGAGTGATGATGATATACAACAAGGACATGTTGATACTGTAAGTAATACTAAGGTTATAGTGAAAGCAGAGGAGAAGGAAAATAAGGACCATTTGGCAGATGAGAAAATAACAGAAAGCACCGAGGATGTTGCAGATGAGGAAGATGTCAAACCTTTTAAGTGTGCAGAGTGTAAAAAAATATTGAAGAGTGAAACGTCTTTGCAGAGACACAAGAATAAAGTGCACAGTGATGAGAGAAGAAAAATTAATAAAGAACCAAAAGAGAGTAAATGTGTGAGAACTGGACACGGGAAAGATAAAAGGTACCACTGCAGATCATGTCCGTTTGAAAGTAAACGCTGGTTGAGTGTCGTCTATCACGAACGTCGTCATACAGGAGAGAAGCCTTACAAGTGTCATCTCTGCAGCCGAGCTTATAGCCAACCTGGAGGGCTTAAAACACATCTCAAGACACACAGCGACAAGATGTATTTCACATGTGCAGTGTGTGGAAAACAATTCAAATATAAAAACCAATTCAGAATCCACATGCGTATACATAGTAAAGACAGAGAGCGATACACATGTCAAATTTGTAATGACACATTGGCAACAAAAGAAGGACTAGAACTTCACACAAGACGACATTATAACATTAAAAACTACAGTTGCGATACTTGCGGACTTCAATTTGTAGCATTAGCTGAATTGAAAAGTCATATGAATAAACACATTACAGAAAAACTATTTAAATGTGATTTATGTAGTTATAGTACTGTAACAAAGCATAGATTACGATTCCATATTAGTAATCATTCTAAAAATCGTCATCTGAAATGTGAACTTTGTGATATGTCCTACGTCACGAAATATGAATTAAAAATTCACATTAGAACACACACGGGTGAAACTAGGTTTACTTGTTGTATTTGTCAAAAGAAGTTTATACATCTTTCTAGTATTCGGCAACACATGCCGCGTGTGCACGGTCTTAAGTACGAACCAGATAAAAATTCAGATAAGAGATCTGTTAAAAGAATTAATGCACAGGAATGTAATAGAAATACAAGTAATGTAATAGAAAACAGTTAG
Protein Sequence: MDIEDSAIMNYLCRICLSKDSVDLVSLFDDNVLPNLSQKIMFCTNLKLFPIPGLPNEICKLCCDVLTIADNFRNKCRESDNFLRKLCPERFIHENKLNTKEFEDDIESQKETSSVQKGENSTNKITSNLELLPSQERAFTKKIDNNDFLYEVQIKQENNEPFEIENSVEDDYSSEDEKRQIFKDGKQKLDKNKDVLYNEGTDKIFKCRKCGKSLSSSSTLSRHMKVIHSEERNKAKGIIKSRTKNSKLSDDDIQQGHVDTVSNTKVIVKAEEKENKDHLADEKITESTEDVADEEDVKPFKCAECKKILKSETSLQRHKNKVHSDERRKINKEPKESKCVRTGHGKDKRYHCRSCPFESKRWLSVVYHERRHTGEKPYKCHLCSRAYSQPGGLKTHLKTHSDKMYFTCAVCGKQFKYKNQFRIHMRIHSKDRERYTCQICNDTLATKEGLELHTRRHYNIKNYSCDTCGLQFVALAELKSHMNKHITEKLFKCDLCSYSTVTKHRLRFHISNHSKNRHLKCELCDMSYVTKYELKIHIRTHTGETRFTCCICQKKFIHLSSIRQHMPRVHGLKYEPDKNSDKRSVKRINAQECNRNTSNVIENS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -