Acin050483.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388320.1:5588978-5609029[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.16 18 7.5 0.2 1 21 154 174 154 175 0.93 2 14 0.001 0.11 14.4 2.7 2 23 211 232 210 232 0.96 3 14 0.036 4 9.5 1.1 5 23 241 260 240 260 0.89 4 14 0.054 5.9 9.0 0.1 3 23 266 285 264 285 0.96 5 14 0.00015 0.016 17.0 4.0 1 23 291 313 291 313 0.97 6 14 0.0011 0.12 14.3 0.3 2 23 320 341 319 341 0.97 7 14 0.11 12 8.0 0.3 1 16 347 362 347 364 0.91 8 14 0.034 3.7 9.6 0.1 1 21 382 402 382 403 0.94 9 14 0.0024 0.27 13.2 3.2 2 23 437 458 436 458 0.97 10 14 0.045 4.9 9.2 2.2 5 23 467 486 466 486 0.92 11 14 0.023 2.5 10.1 0.1 3 23 492 511 490 511 0.96 12 14 2.9e-06 0.00032 22.4 2.9 1 23 517 539 517 539 0.99 13 14 0.0016 0.18 13.8 0.2 2 23 546 567 545 567 0.96 14 14 0.00023 0.025 16.4 1.1 1 23 573 595 573 595 0.98
Sequence Information
- Coding Sequence
- ATGAAGGTGGAGGATCCGAGGATGACAGCAGCGGGTAGAATCGAACCCAGTTTTCCAAAAGATCCAGAGAAGAGGTTACAATGGCTTGAAAGGATAAATCGTCCAGGCTGGGAGCCAAATGATGCTACAGCATTGTGTTCGAGACATTTCACTAAATTAGATTTCATTTATAGTAGTAAAGGTAACAAGTTGTATAAAGGCGCTATTCCATCACTACATCTGCATGACACGGTTGATGAAAAAACTATGGCAATGAAAGCAAAAGAGAGAAAACCGAGACAACCGAAACAACCTAAAACAAAAGTATTGAATGTAACAATTGGAAATGATGATAATGCGGATGATGTACCACTTATGGATATTAAAATTGAAGCAAGGATATACAATCGCAATAATTTGTTCTTAAATTACTACCCGGATGAAACAGAAGATTGTCCCAGCCAGATTGACTATAGAGTGTTTGCGTGTAAATTTTGTTTGGTGATGTTTGTGCAAGAACCTTCTTTAACATCACATTATAACTCCTTAAATAATAAAGGAGAATGTTACATCAAAAGACAGAATGCACCCAGGGGCTCAATTGCCAAGATTTTACCAGAGGGAGTAACACGGCGAGATGACGGCAAAATTCAGTGCGATAAATGTAACAAGAGCTACAAAAGTCCCTTTTACTTCTGGGAACATTACCATTCACACTCTGAAACAATAGAAGTATATTGCGAGTGTGGCAAAGGGTTTAAAACCAAACATAGATTAATATATCACATCGGCTTAATGCACAACAAGAAAGTGATATGCGAAATATGTGGAGTTAATGTATCAAAATTCAGCTTGATAAGACATTTGAAGCAGCATTCTGATCAAAGACCCCACAACTGTACATTTTGTACTAAGGCATTTAAATTTAAAGAAACTTTAATCGCTCACACTAGGACACACACACATGAAAAGCCTTGGAAGTGTCAGTATTGTGGGATGGCCTTCTCTGAGAAGAGGAGATACAATATACATGTTAATATACACGAAGGAAAGACTCCTTATAAATGTAATCTATGTTGGAGAATATACAATCGCAACAGTTTGTTTTTAAATTACAACCCAGATGAAACAGAAGATTGTCCCAGCCAGATTGACTATAGAGTGTTTGCATGTAAATATTGTCTTGTGATGTTTGCACAAGAACCTTCTCTAACATCACATTATAATTCTGTAAATAAAAATGGAATATGTTACACCAAGAAACAGAAAACTCCCAGTCGACCTACTGATTTTCCAAAGGGGGTTACACGAGGAGATGACGGCAAGATTCAGTGCAATAAATGTAGCAAGAGTTATAAAAGTCCCTTTTACTTCTGGGAACATTACCATTCACACTCTGAGACAATAAAACTATATTGCGAGTGTGGCAAGGGGTTTAAAACCAGACATAGATTAACATACCACATTGACTTAAAGCACAACAAGAAAGTGATATGTGAAATATGCGGAGAAAATGTGTCTAAACTCAATTTGATAAGACATTTGAAGCAGCATTCTGATCAGAGACCATACAAGTGTACTTTTTGTACTAAAGCGTTTAAATTCAAAGAAAATTTGATTGTTCATACTAGGACGCATACACATGAAAAGCCTTGGGAGTGTCAGTATTGTGGAATGGCCTTCTCTGAGAAGAGGAGATACAATATACATGTTAATGTACACGAAGGAAAAACTCCTTATAAATGTACTATGTGTCCGAGTTCATTTGTTTCCAAATTAAGATTAAATAAACACATGATGGAGCATAGAGATTGTAGAAGTTCTCTTTAG
- Protein Sequence
- MKVEDPRMTAAGRIEPSFPKDPEKRLQWLERINRPGWEPNDATALCSRHFTKLDFIYSSKGNKLYKGAIPSLHLHDTVDEKTMAMKAKERKPRQPKQPKTKVLNVTIGNDDNADDVPLMDIKIEARIYNRNNLFLNYYPDETEDCPSQIDYRVFACKFCLVMFVQEPSLTSHYNSLNNKGECYIKRQNAPRGSIAKILPEGVTRRDDGKIQCDKCNKSYKSPFYFWEHYHSHSETIEVYCECGKGFKTKHRLIYHIGLMHNKKVICEICGVNVSKFSLIRHLKQHSDQRPHNCTFCTKAFKFKETLIAHTRTHTHEKPWKCQYCGMAFSEKRRYNIHVNIHEGKTPYKCNLCWRIYNRNSLFLNYNPDETEDCPSQIDYRVFACKYCLVMFAQEPSLTSHYNSVNKNGICYTKKQKTPSRPTDFPKGVTRGDDGKIQCNKCSKSYKSPFYFWEHYHSHSETIKLYCECGKGFKTRHRLTYHIDLKHNKKVICEICGENVSKLNLIRHLKQHSDQRPYKCTFCTKAFKFKENLIVHTRTHTHEKPWECQYCGMAFSEKRRYNIHVNVHEGKTPYKCTMCPSSFVSKLRLNKHMMEHRDCRSSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -