Acin051036.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- ZIPIC
- Assembly
- GCA_947579605.1
- Location
- OX388320.1:14948391-14949827[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.025 2.8 10.0 0.3 2 23 161 182 160 182 0.96 2 11 5.8e-05 0.0064 18.3 1.1 1 23 188 211 188 211 0.97 3 11 6.2e-07 6.8e-05 24.5 1.2 1 23 228 250 228 250 0.97 4 11 5.5e-06 0.00061 21.5 1.4 1 23 256 278 256 278 0.99 5 11 7.8e-05 0.0086 17.9 2.6 1 23 284 306 284 306 0.98 6 11 2.8e-05 0.003 19.3 0.1 1 23 312 334 312 334 0.97 7 11 0.00013 0.014 17.2 0.3 1 23 340 363 340 363 0.96 8 11 2.4 2.6e+02 3.8 1.3 2 21 369 385 369 387 0.73 9 11 0.0035 0.38 12.7 8.0 1 23 393 415 393 415 0.95 10 11 0.099 11 8.1 0.3 1 23 421 445 421 445 0.91 11 11 9.9e-05 0.011 17.6 5.1 1 23 451 474 451 474 0.97
Sequence Information
- Coding Sequence
- ATGTCTTCTGAAGTAGAGTCCTGGAAATGCAGAATATGTTTAGCCGAGACAAGTCTTCTGAATTCCATATTTAGTTCAGACTTCATTAGCGATATCAGTGAAAAAATAGAACGATATTCAGGCATAAAAATATCTGCAGATGACTGTTTACCCCATGCTATATGCAATTTGTGTATTGAAGAATTGAAAGTTATTGATAACTTTGTAGAAAAATGTCGACAGTCTGATAAAAAGTTACGAGAACAGGTGGAAACCAAAATAAAAAATGAAGTGGAACAAACCAATGAAGTTGATTATTGGATTGATATCAAAATGGAAGATGAAGATGATTTGCCAATTATAAAACTTGAGAGCCATCAAACAAGAGAAGTTAAATTAGATAGGATTATAAGAAAACATCACAAACGCAAGGGTTTGATTAAGTCAAAAAGAAAGAAAGATAAAATTGTAAAATTGAAAAGAGAATTAAATGGTCCTTGTGTGTGTAATGCTTGTGGTTTACAATTAAAAAGTCGTTCTGCCATGGAGATTCATTGGAGAGTCCATTCAGGTGAGAAACCTTATGTGTGCACTCAGTGTCTCAAAAGATTTGCTCAGAAAAATACTTTACGTGTTCATATAGAGCGGCGACACAATACTATTTCCATTAATAACTCACACACGAGCGCACCAGATAGGAGGTTCTTCTGTGAAACATGCGGTAAAGCTTTTAAGAGTAGAACCAGTCTTAAAATTCATCTTCGAGTACATAATGATGAGCGGCCATATAAATGCAGCCAGTGTGATAGAAGATTCACTCAGCTAGGATCACTTTCTGTTCATGAACGAAGGCACAGAGGTGAACGTCCTTATTCTTGTGACGTCTGTCAAAAAACATTTGTGGAAATGACTCATTTAAAAAGGCATTACAGTGTTCATAGTGATGAGCGGCCATATATCTGCAGCATATGTGGAAAAGGCGTGAAATCACCCTTTGCTTTGAAGCAGCATCTCAAATTACATTCCAACAGTAAGGAACATGTGTGTGATAAATGTGGTATGTCATTCACAATAAAAGGGAGCCTCGATTCTCATGTCAGAGTGGTACATTCAGAAAAATCTGGCCAGTGCTTAATATGCAATAAGATCTGCTCCAATCTTGATGACCACATGACCCTACATAGTGGAGAAAAACCGCACTGTTGCGAGGTTTGCAATAAATGTTTCTCTAGGAAAAGGGGCCTCATGATACATTCCAAACAACACACGCAAGAAGGGAAGTACGAGTGTAATGTGCCTGGCTGTGGAAGAACATTCTACGCTCAATGGGTTCTTGAATGTCATATTCTGAAGCATACAGGAAACACTCCGTTTGTCTGTAAGCTATGTAAGAAAGGATTCGTTCGAGTCTGCCATTTAACTAAGCACATGAAGATTAATCACCCAAACGATGAATGA
- Protein Sequence
- MSSEVESWKCRICLAETSLLNSIFSSDFISDISEKIERYSGIKISADDCLPHAICNLCIEELKVIDNFVEKCRQSDKKLREQVETKIKNEVEQTNEVDYWIDIKMEDEDDLPIIKLESHQTREVKLDRIIRKHHKRKGLIKSKRKKDKIVKLKRELNGPCVCNACGLQLKSRSAMEIHWRVHSGEKPYVCTQCLKRFAQKNTLRVHIERRHNTISINNSHTSAPDRRFFCETCGKAFKSRTSLKIHLRVHNDERPYKCSQCDRRFTQLGSLSVHERRHRGERPYSCDVCQKTFVEMTHLKRHYSVHSDERPYICSICGKGVKSPFALKQHLKLHSNSKEHVCDKCGMSFTIKGSLDSHVRVVHSEKSGQCLICNKICSNLDDHMTLHSGEKPHCCEVCNKCFSRKRGLMIHSKQHTQEGKYECNVPGCGRTFYAQWVLECHILKHTGNTPFVCKLCKKGFVRVCHLTKHMKINHPNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00179738;
- 90% Identity
- iTF_00179738;
- 80% Identity
- -