Basic Information

Insect: Athripsodes cinereus
Gene Symbol: -
Assembly: GCA_947579605.1
Location: OX388327.1:8184623-8196107[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.7e-06 0.00041 22.1 4.3 1 23 258 281 258 281 0.97

2 11 0.037 4.1 9.5 0.6 1 23 316 338 316 338 0.98

3 11 0.00023 0.026 16.4 1.2 1 23 344 366 344 366 0.97

4 11 0.0004 0.044 15.7 5.3 1 23 371 393 371 393 0.96

5 11 0.034 3.8 9.6 3.6 1 23 399 421 399 421 0.94

6 11 3.6e-07 3.9e-05 25.3 2.1 2 23 455 476 455 476 0.98

7 11 6.2e-06 0.00069 21.4 0.0 3 23 510 530 509 530 0.98

8 11 0.003 0.33 12.9 1.4 1 20 536 555 536 557 0.95

9 11 0.00064 0.07 15.0 1.2 1 23 563 585 563 585 0.97

10 11 3.3e-05 0.0036 19.1 0.9 2 23 592 613 591 613 0.97

11 11 0.00077 0.084 14.8 4.6 1 23 619 642 619 642 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.7e-06	0.00041	22.1	4.3	1	23	258	281	258	281	0.97
2	11	0.037	4.1	9.5	0.6	1	23	316	338	316	338	0.98
3	11	0.00023	0.026	16.4	1.2	1	23	344	366	344	366	0.97
4	11	0.0004	0.044	15.7	5.3	1	23	371	393	371	393	0.96
5	11	0.034	3.8	9.6	3.6	1	23	399	421	399	421	0.94
6	11	3.6e-07	3.9e-05	25.3	2.1	2	23	455	476	455	476	0.98
7	11	6.2e-06	0.00069	21.4	0.0	3	23	510	530	509	530	0.98
8	11	0.003	0.33	12.9	1.4	1	20	536	555	536	557	0.95
9	11	0.00064	0.07	15.0	1.2	1	23	563	585	563	585	0.97
10	11	3.3e-05	0.0036	19.1	0.9	2	23	592	613	591	613	0.97
11	11	0.00077	0.084	14.8	4.6	1	23	619	642	619	642	0.94

Sequence Information

Coding Sequence: ATGGGGAGCACTTGCCGCTGTTGTTTGAGCGGCAATGCTGTGGAAAAGATATTTACCAAACTGGAAATAGCAGATTATGAAGAAGCAACTTATTCAGATATGATTGCAGCTCTTACATCCTATAAGGTTCTTTTATCAGATGGTTTACCACAACAAATATGCTGCAAATGTTGTAAAGAACTTAAACAAGCCTACAGATTTCAAATAAAATGCAAAAAGTCGTACCACACACTGTTAAATACGTCAAGCAAGAAACCCATCGTGTTAATTGAAAAGATTAAGACGCTCGATGAGTCTTTTGATTGTGATGATAAGATATACGAACCGGATGTAGGTGATAATGATGCTGAAGAAATGCATTGCAGAGATGTAAAAGGGATAAAGCAGGAGAGTGATATTCAAGATGATGGGTACATATACTTAGAGCCTTTGGACGACTTTGTGGATCAGGATGTTCCTGCAGAAGAGTATGAACAAATGGAACAAGATGTAAAAGTAGAAAGAAGTAGGACATGGAAAACCCTGAATCGACTAAGATCTGGTGTAGGAAACTGCTGTGAGAATAGAGAACGATGGGGCTTCCTACAGGACGAATCTGGAGCGTGTGACTGTGGTGCAGCACAGACCATGCCACATTTGTTGGAGTGTCCGTTGTACCCTGTCACATGCACTATGGAGGATATTTTTGACTTATCTCCATGTGATGTGCATATCCAAACCCCGGAAACTATAAACGAGAAACCTTTGTTGGAGCGTCCACCCAAATCCATCCACAAGTGTCCCGTATGTGAAGAAAAGTTTAAGTACAAATCAAATTTTAAAAATCACATGAAGAAAATTCATCCAGAATATGAACAGGATGATTATTTTTGTGATTTATGTAATAAAGCTTACAAAAACGGTTCTCGCCACATTAGAAGGAAACATAAAGATCAAAATAGAATCTACAAGTGTAGCTCGTGTGGTGAGGAGTTCCCGTGCAGCAGATCACTGGGGCTGCACATGGAGGTGCACAAAGTAAATGGAGCCTTTAAATGTCCCAAGTGTCCTCTTACATTTGAGAAATCTAGTGGCTATTACAAACATTTGTTCGTCCACAAAGAGAAGACACATTTCTGTCACATTTGCTCCAAGTCCTTTACATACAAATATGGACTGGATAAACATTTAGTGACCCATTCAGACGAAAGACCTCACAACTGTCCAGTGTGTAAGAAAACTTTTAAAACAATTGATGTGAGGAATGAGCATGTGCGACATCACACGGACGTAGAAAATCTAGACAAAGAGACATTAGCTGAATACACGGAAGTTGTCAAGACATTCAGGAAACAGTACGTCAGAAAGAAGCCTCCGAAAAACACGTGCAATATATGTGGACGAGTTTACCGCAGAGCAAGCCATCTTAAGGATCACATGAACAAGCACCTTGGAATATTACCTTACTTCTGTGAAATATGCCAAAAGCATGTGCAATCAGAAGAACGTCACAAATATTTCCATAAAATAAAACATGTGGATGCAGCATGTCCCATTTGTGGCAAGGTCTTTGTGACTAAGGCTACCATGGTCGCTCACGTGAAGACACATAATAAGGAGAAGGCATACAAGTGTGATATCTGTGAATCTGCATTTGCACAAAAGTGTGGTCTCAAGAAACATTTGATTCACACTCAGGAGAGACCGTTCCCGTGTGACAAGTGCCCCAAGAAGTTTATGACGGGAAACCAGCTTCAGACTCACAAACTGAGACACGAGGATGTCAGATCAATTCAATGTCTTCTCTGCGATAAAGCATTCAAAACCAAAAATGATATGCGAACTCACCTGAAGGTCCATGCCAAGATCAGGAAACATCCCTGTAAACTGTGTGATAAAGTGTTCTACAGGTCCGATCATAGGCAGAGGCATGAGAAGTATGTCCACTGTATGAATGTAAAAAATGAACAGGGTGAAACCAAATAA
Protein Sequence: MGSTCRCCLSGNAVEKIFTKLEIADYEEATYSDMIAALTSYKVLLSDGLPQQICCKCCKELKQAYRFQIKCKKSYHTLLNTSSKKPIVLIEKIKTLDESFDCDDKIYEPDVGDNDAEEMHCRDVKGIKQESDIQDDGYIYLEPLDDFVDQDVPAEEYEQMEQDVKVERSRTWKTLNRLRSGVGNCCENRERWGFLQDESGACDCGAAQTMPHLLECPLYPVTCTMEDIFDLSPCDVHIQTPETINEKPLLERPPKSIHKCPVCEEKFKYKSNFKNHMKKIHPEYEQDDYFCDLCNKAYKNGSRHIRRKHKDQNRIYKCSSCGEEFPCSRSLGLHMEVHKVNGAFKCPKCPLTFEKSSGYYKHLFVHKEKTHFCHICSKSFTYKYGLDKHLVTHSDERPHNCPVCKKTFKTIDVRNEHVRHHTDVENLDKETLAEYTEVVKTFRKQYVRKKPPKNTCNICGRVYRRASHLKDHMNKHLGILPYFCEICQKHVQSEERHKYFHKIKHVDAACPICGKVFVTKATMVAHVKTHNKEKAYKCDICESAFAQKCGLKKHLIHTQERPFPCDKCPKKFMTGNQLQTHKLRHEDVRSIQCLLCDKAFKTKNDMRTHLKVHAKIRKHPCKLCDKVFYRSDHRQRHEKYVHCMNVKNEQGETK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -