Acin007633.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388307.1:2062123-2064582[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0069 0.76 11.8 1.8 1 20 91 110 91 113 0.95 2 24 0.0026 0.28 13.1 0.2 1 23 117 139 117 139 0.98 3 24 0.033 3.7 9.6 0.5 2 23 149 170 148 170 0.96 4 24 0.00014 0.016 17.1 2.0 1 23 175 197 175 197 0.97 5 24 0.32 36 6.5 4.6 1 23 203 227 203 227 0.97 6 24 0.027 2.9 9.9 2.2 3 23 235 255 233 255 0.96 7 24 0.053 5.8 9.0 2.4 1 23 261 283 261 283 0.96 8 24 0.0021 0.24 13.4 5.2 1 23 289 311 289 311 0.98 9 24 0.0057 0.62 12.0 1.0 3 23 319 339 317 339 0.97 10 24 0.00085 0.093 14.6 6.7 1 23 345 367 345 367 0.98 11 24 6.8 7.5e+02 2.4 5.0 1 23 373 395 373 395 0.96 12 24 0.026 2.8 10.0 1.4 1 23 401 423 401 423 0.97 13 24 7.3e-05 0.0081 18.0 1.0 1 23 429 451 429 451 0.98 14 24 0.0029 0.32 13.0 7.3 1 23 457 479 457 479 0.98 15 24 0.04 4.4 9.4 3.7 2 23 486 507 485 507 0.96 16 24 0.00087 0.096 14.6 0.8 1 23 541 563 541 563 0.94 17 24 0.0028 0.31 13.0 2.6 1 23 569 591 569 591 0.98 18 24 0.003 0.33 12.9 2.8 1 23 597 619 597 619 0.98 19 24 3.4 3.7e+02 3.3 1.5 1 23 625 647 625 647 0.92 20 24 0.033 3.7 9.6 0.2 1 23 653 675 653 675 0.98 21 24 0.0018 0.2 13.6 1.3 1 23 681 703 681 703 0.96 22 24 0.14 15 7.7 4.7 2 23 710 731 709 731 0.96 23 24 1.4 1.6e+02 4.5 7.2 2 23 739 761 738 761 0.94 24 24 0.0015 0.17 13.9 2.7 2 23 767 789 766 789 0.96
Sequence Information
- Coding Sequence
- ATGACCGAAATCAAAGTCGAAATACCAATTGAGACAAATGATGAAGAAGGGGAAGACTATGGTGAAGAAGTTAACGATCAGGAGATGGAGAACTATTATGAAGAAACCGGAGAGAATTCAGAAGAACCACAGGATGGAGAAATGTATGATGAAGAAGAAGAAGGTGAAGAAAATGAACAAGATTCAGAAATATTTCGGGAAATTCCAATAGAATTTGATACAAAACCTGTAAAACAAAAAGGTAAAAAGAAAAAAAGACCACCGCCCAATTTCAAATGCCCAAGATGCCCGTTAACATTCATTTTGGAACGCAATCTAGAAAAACATCTCACATGTCACGATCAAGTCTTCAAATGTGACTTATGCCCTTATACGTCAGTCATACCGAAAAATTATACAAATCACATCCGAGCACATAAAATACGAACTTCAATTAAATCGCTAAAATGTCAGATGTGCGATAAAGAAATGCAGAGTCAACAGGAGTTGAAAGAGCATCTGGTTACGCACGGATATAAAAATCATGTCTGCGACGTTTGTGGGTATTCCACCATGAATAAAACCAATTTGCGAAGTCATCAATTGAAGCATTCCGAAGAACGTCCGCATAAATGTACTTTCGAAGGATGTACGTTCTCATGCAAAGAAGCGAAATATCTAAAGAAGCATGTTTTAATACATTCCGATATTAAACCACTGGCCTGTGACTTGTGTTCATATACGTGTAGAAGTTTGCCGAGTTTGAAGAATCATAAAATGAAACATTCGGGCGAAAAACCATTTGCATGCACCGTTTGTTCATATCGTTGTCGGGAGAAGTTTGTTTTACAAAAACATTTATTGATTCATACAAGTGAGAAGCCATTTAGTTGTTCCTTGTGTTCTTATACTTGTAGCAGGAAAACTAGACTTAATCTTCATATGCAAACGCATAGCGAAGAAAAGCAGATAGCTTGCCCATATTGTTCCTATCGTTGTCGTGCAACATCACTCTTAAAAAGTCACCTGATTACTCATTCTGAAGATCGCCCGTATTCGTGTGATATTTGTAATCATCGCTGTCGTAGAAAAAAGACGCTAATCAAACACATTAAAAATCACGATTCCAGTTTTACACATAAGTGTCCGTTTTGTATTTTCAGTTGTAGATATGTCGAATATTTCAAACAACACATGCTTGCGCACGGAATTGACAGACCTTTCGCTTGTCTCGGATGTACAGAAACATTCGACGATTATCAAAAATTCAGATATCACGAGAAAACTCACGAAGATGTTAAACCCTACGTTTGTGAAGTCTGTAATGCTTGCTTCCGTCGAATTGGAGATTTACGTAATCATAAAATAACCCATAATCTTGTGCGTTCGTTTAGCTGTCACATATGCGACTTTACAACACATCGAAATGCACATTTGAAATCGCATATGGAGAAGCATAATAAGGAAGATCAACTTGTTTGTCCTATTTGCAGTTATAATTGTAAACGTGACGCACATTTTGAGAAGCATAAAAAGGAACACGAAGTAGGAACTGAATTTTCATGTGAGAGATGCTGTTTTATAACTGCGGATACAAATATGTTGATTGAACATTCAATTACACACGAACTATATAGAACTTTCACTTGTCCAGTTTGCGAACAGAAATTCAATTCGAGAACTGCGTTAATTACCCATAAATTCGAACACGGTGAAGAAAACGTTTACAACTGTGAAAAATGTGATTTAAAATTCAACAACAAACTAAAATATATCGAACATCGCAAGACGCACACGGAACCACTATTTTTCAAATGCACGGAATGTGATTTTACCACAGAACACATTACTAATTTACGTAAACACAAAATTGTGCATACAGGGGAAAAGAGATTCAAATGTTTGCAGTGTGATTTTACAACGTACGCTTACAGCCGTTTGCGGATTCATTCGTACATCCATACGGGAGAGAAACCGTTCCGTTGTGATCAATGTCCATATGCTGGCAGAGATCCAAACATACTAAGAGTCCATAAAAGGACGCACGATGTTAAGAAACCACATAATTGTACACAATGTAACTTTGGTACGAGAAACAGATCAGATCTTGCACTACACATGCTTGTACATACAAAAGAATATCCGTTATCGTGTCCCAAGTGCTCGTTCAAATGCAGATTGAAACAGAAATTAAAAACTCATATTAAACTTCACGATGAATCTACTAAAGTTATTAAATGCAAACATTGTAATTTTCAATGTAATATGCATTATTTATTAAGGGAACATATGGAACAAACCCATTATGGAGAACCGTTGAAATGTGATATTTGTGTTTATACTTGCCGAACGAAAAAAGCGTTGAAGAACCACGTCAAAAAAGTTCATGAAAATCCGGAAGAAGAAGAAGGAACTATTGAAGAAAATGATAGTGATTATGTGACGCTGGCTGATTTGAAAATCAAGCAAGAGCCAATATAA
- Protein Sequence
- MTEIKVEIPIETNDEEGEDYGEEVNDQEMENYYEETGENSEEPQDGEMYDEEEEGEENEQDSEIFREIPIEFDTKPVKQKGKKKKRPPPNFKCPRCPLTFILERNLEKHLTCHDQVFKCDLCPYTSVIPKNYTNHIRAHKIRTSIKSLKCQMCDKEMQSQQELKEHLVTHGYKNHVCDVCGYSTMNKTNLRSHQLKHSEERPHKCTFEGCTFSCKEAKYLKKHVLIHSDIKPLACDLCSYTCRSLPSLKNHKMKHSGEKPFACTVCSYRCREKFVLQKHLLIHTSEKPFSCSLCSYTCSRKTRLNLHMQTHSEEKQIACPYCSYRCRATSLLKSHLITHSEDRPYSCDICNHRCRRKKTLIKHIKNHDSSFTHKCPFCIFSCRYVEYFKQHMLAHGIDRPFACLGCTETFDDYQKFRYHEKTHEDVKPYVCEVCNACFRRIGDLRNHKITHNLVRSFSCHICDFTTHRNAHLKSHMEKHNKEDQLVCPICSYNCKRDAHFEKHKKEHEVGTEFSCERCCFITADTNMLIEHSITHELYRTFTCPVCEQKFNSRTALITHKFEHGEENVYNCEKCDLKFNNKLKYIEHRKTHTEPLFFKCTECDFTTEHITNLRKHKIVHTGEKRFKCLQCDFTTYAYSRLRIHSYIHTGEKPFRCDQCPYAGRDPNILRVHKRTHDVKKPHNCTQCNFGTRNRSDLALHMLVHTKEYPLSCPKCSFKCRLKQKLKTHIKLHDESTKVIKCKHCNFQCNMHYLLREHMEQTHYGEPLKCDICVYTCRTKKALKNHVKKVHENPEEEEGTIEENDSDYVTLADLKIKQEPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -