Basic Information

Insect: Athripsodes cinereus
Gene Symbol: -
Assembly: GCA_947579605.1
Location: OX388321.1:24288957-24292624[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0014 0.15 14.0 0.1 1 23 412 434 412 434 0.97

2 11 0.024 2.7 10.1 0.7 1 20 440 459 440 462 0.95

3 11 0.00048 0.053 15.4 4.1 1 23 469 491 469 491 0.97

4 11 8.8e-05 0.0096 17.7 0.2 1 23 498 520 498 520 0.98

5 11 4e-06 0.00044 22.0 1.4 1 23 526 548 526 548 0.98

6 11 2.2e-05 0.0025 19.6 0.4 1 23 554 576 554 576 0.98

7 11 1.2e-05 0.0013 20.5 0.9 1 23 582 604 582 604 0.97

8 11 1.3e-06 0.00014 23.5 0.4 2 23 611 632 610 632 0.97

9 11 2.7e-05 0.003 19.4 2.5 1 23 638 660 638 660 0.99

10 11 0.0002 0.022 16.6 2.3 1 23 666 688 666 688 0.98

11 11 0.00081 0.089 14.7 4.6 1 23 694 717 694 717 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0014	0.15	14.0	0.1	1	23	412	434	412	434	0.97
2	11	0.024	2.7	10.1	0.7	1	20	440	459	440	462	0.95
3	11	0.00048	0.053	15.4	4.1	1	23	469	491	469	491	0.97
4	11	8.8e-05	0.0096	17.7	0.2	1	23	498	520	498	520	0.98
5	11	4e-06	0.00044	22.0	1.4	1	23	526	548	526	548	0.98
6	11	2.2e-05	0.0025	19.6	0.4	1	23	554	576	554	576	0.98
7	11	1.2e-05	0.0013	20.5	0.9	1	23	582	604	582	604	0.97
8	11	1.3e-06	0.00014	23.5	0.4	2	23	611	632	610	632	0.97
9	11	2.7e-05	0.003	19.4	2.5	1	23	638	660	638	660	0.99
10	11	0.0002	0.022	16.6	2.3	1	23	666	688	666	688	0.98
11	11	0.00081	0.089	14.7	4.6	1	23	694	717	694	717	0.97

Sequence Information

Coding Sequence: ATGGAGGAACTGTACTGCAGATGTTGTTTGTCCACCGGCAATCCTCTTTACAGAATGGTGAAAGATAGTTTGTTGATTGTCTTGTACAGGTTGCTGTTGGGATACCAAGAGCGTCATGAAGATTTATCTTACATTGTGTGTGGAACATGCAAACATCTTCTGCATAGGATGTTGGCATTTCAAGATGCTTGTCGTAAAGCCGATCTTCTTATAAACAAATACAAAGCACAACATTTAAACATTGAGAATGATAATCAAGCATTCTTATATGCGAGCCTTAAAATATCTTCAATTCTTCCGCAACTAAAATATTCCGGAACGCAAAACGTTGATATACCTGCAGAAGATTGTATGTTGATACGACGTAGACCAGTCAATGTAGTTACACTCTCAAGACCAGAAAATATAATATCAAAAAACGATAAAGATTCCAATCAAATAATATTGTCATTTAAAAATCCCATTGATGTAGTTGATGATGAAGAAAATGAATGCGATACGGAAGATTTGATGTTTAAAAGTACAGATTTGAGTGTAGTGGATGACGACAGCTATTTTGATTTTACAATTGTAGTCAAAAACAATGTAGAAGAAGATTGTTGTCATAAATGTTACAAAAGGGGTGAAACAAATGAAATACAAATCAAAACAAAATCATCGACAGAAACAAAAGACATAGGTGTTGTTGATGATGATATTCATAATAAGACTGATAATATTGACTTTAGTAGTAAGAATGATTCCGAACAAACAAATGATATTCAAAAAAGTAAATTAATTAATCATCATTCAAAAACAAATGCAAATAGATCTAATAATATTTTGTACGAAACTAAAAATGGAGTTATTGGTTTGCGTTTGAATGCTGATGTTGATGTTCAAAATCAGTGTAATGAGATGACAAATAATAAAGATGTTGAGAATAGTGATGGTGTGGATTCTGTACTGGGAAATCAGTGCTCGGATGGTGAAAGTAGTTTTGATGTGAAGGAAGAAGTAAATGATTTTGATATTGAAGATGAATTGGATCTTATCGCTACAGAAGATGCAAGTTTAACAAATGATGGACAAATATTATTAAAATTAGCAAAAGCCGAAGATCAAACATTGGATGATTTACAAAAGATATCCGCTGTCTTCGCACATGTTAAAAAGACAAAGAAAATCAAGACCAGGAAGTTGAAATTGAAAAAGAAAAATAAATTGAACATTAAAGTAAAGAGTAAAAGGCGTTATCCTTGTGAAATATGTGGATTAGTATTTGACTTGGCGATTCATTTAGAAATTCATAACTCAACTCACACAGGTTTAAGCCGCTTTGTTTGTGATGTTTGTTGTCGTGCTTTTCCATTGAAAAGTGCATTGGAAAAACATATGGCTTGTCATTCCTGCGATCGTAAAAGATACAAGTGCGATATGTGTCCAAAAACATTTATATTTAAAAAGTTATTATATAAACATAAATTTAAACATACAAATGAAATCAAACCATATGTTTGCAATATTTGTAGTCGAGGTTTTGTGTTTGAAAATGAATTGATGAAACATATGTTATTACATACTGATATCCGTCCATTCTCATGTCCAAAGTGTCCTAAGAAATTCACTCAAAAAGCTTTCCTATCACAGCACCTTCTGACACATGTTGAGGGAGAGTTGTATATCTGTGACATTTGTGGAAAAGGCTTTGGACAGAATGCTAAACTGAGCTATCACAGAAAGACACATTTGGAAATAAAACCTTTTCAATGTGATTTATGTCCGCGAAGTTTCGTTCGTTCAGGACAACTCAAAACTCATAAAATCTATCATTCTGACGAACGTCCTTGGGTGTGTGAACATTGTGGGAGAAGTTTTCGTGTCAAAGGTGCATTGACAGCACATAGACGTGTCCATTCTGGTGCTCGGCCGTATAAATGCGATATCTGTCATCAGTCGTACACAGAAGCGGGATATTTAAAGAAACATAAAAGGATTCATTCGGGTATTAAACCATTTTCATGTGATATATGTGGAAGATCTTTTAATGAGACTTGTACGCTGGCGAGACATAAATTGACACATAGCGATGAGAGGAAACATGTTTGTAAGGAATGTGGTGGCAAGTTTAAGTATAGTGGATGCCTCAACAAACATATACAAAGAAAACATGGCAACACCAGGCTGCAAATGCAACAGTGA
Protein Sequence: MEELYCRCCLSTGNPLYRMVKDSLLIVLYRLLLGYQERHEDLSYIVCGTCKHLLHRMLAFQDACRKADLLINKYKAQHLNIENDNQAFLYASLKISSILPQLKYSGTQNVDIPAEDCMLIRRRPVNVVTLSRPENIISKNDKDSNQIILSFKNPIDVVDDEENECDTEDLMFKSTDLSVVDDDSYFDFTIVVKNNVEEDCCHKCYKRGETNEIQIKTKSSTETKDIGVVDDDIHNKTDNIDFSSKNDSEQTNDIQKSKLINHHSKTNANRSNNILYETKNGVIGLRLNADVDVQNQCNEMTNNKDVENSDGVDSVLGNQCSDGESSFDVKEEVNDFDIEDELDLIATEDASLTNDGQILLKLAKAEDQTLDDLQKISAVFAHVKKTKKIKTRKLKLKKKNKLNIKVKSKRRYPCEICGLVFDLAIHLEIHNSTHTGLSRFVCDVCCRAFPLKSALEKHMACHSCDRKRYKCDMCPKTFIFKKLLYKHKFKHTNEIKPYVCNICSRGFVFENELMKHMLLHTDIRPFSCPKCPKKFTQKAFLSQHLLTHVEGELYICDICGKGFGQNAKLSYHRKTHLEIKPFQCDLCPRSFVRSGQLKTHKIYHSDERPWVCEHCGRSFRVKGALTAHRRVHSGARPYKCDICHQSYTEAGYLKKHKRIHSGIKPFSCDICGRSFNETCTLARHKLTHSDERKHVCKECGGKFKYSGCLNKHIQRKHGNTRLQMQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -