Acin050760.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- GLIS2
- Assembly
- GCA_947579605.1
- Location
- OX388320.1:10040206-10045173[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.031 3.4 9.7 0.8 2 23 248 269 247 269 0.97 2 13 0.02 2.2 10.3 0.2 1 23 275 298 275 298 0.97 3 13 0.26 29 6.8 2.0 2 23 338 359 337 359 0.97 4 13 8.1e-06 0.0009 21.0 4.0 1 23 365 388 365 388 0.98 5 13 0.0017 0.18 13.7 1.3 2 23 421 442 420 442 0.98 6 13 0.00061 0.067 15.1 1.0 1 23 448 471 448 471 0.97 7 13 1.1e-05 0.0012 20.6 4.4 2 23 491 512 490 512 0.94 8 13 0.00016 0.018 16.9 3.2 1 23 518 540 518 541 0.95 9 13 0.00015 0.017 17.0 1.3 1 23 547 569 547 569 0.98 10 13 7.5e-06 0.00083 21.1 0.6 1 23 575 598 575 598 0.97 11 13 0.00058 0.064 15.2 0.1 3 23 605 626 604 626 0.96 12 13 0.012 1.3 11.0 0.2 3 23 633 650 632 650 0.96 13 13 0.0022 0.24 13.3 2.8 3 23 658 678 656 679 0.95
Sequence Information
- Coding Sequence
- ATGTATTCTGATAATGAATCTACTTGTAGAATTTGTTTATCTTACGATGTTGATCGTGTTCCACTTTTCGTAAGCCATCATTCTAAAAGATACGATGAACTTATAAAAACTTATACCGGGTTAGAAATACTTCATAACGATCAGCTTCCCGCAGAAATTTGCCATCAGTGTTTGTCTGAATTAGATGTAGTTATAAAATTTATTAGTAAAGTACGTTCATCTATTGAAAAGTTTAACAAAGTTCTTGAAGAAAGATCACATTTTTCAGATGAAACTAAAGAAGACGAGGAAGAAAAAATACCTCTTAGTATTCTAGGAGCGTCTCTAAAAAAGGAAAAAAATGATTATTCAGATGAGGAACGTTCGTATGATGAGCCTGTATTTGGTGACTGTGGAGATGAACCTGATGAATCAAAATGTGAGGAAACCATAAAGAATGAACCTGACGTGATATCATTAGATAACCTCAAATCATTGTTGTCCAACAAAGGTGGAGATGATTTCATATATGTCACTGTAAACAATCTCACCATAAAGAAAGAAGGAATTAAAAAGGAGAAGCCACTTACTCCTGATAGAGATATTCCAGAAATAACAGTGCCAATACCTCTGCAAAAGGCAGTCAAACACAAAAAAGATAAATTAAAAAAGAAACATAGAAAAGACAAACACAAGACTGACATTGACTCTAAGTATAAAGTGTTAAAAGCGAGTGAACATGGCTTATTAAAGGACATGGTGAAGTGCCTGATATGTGGGCAAGTGATGCATAATAGATCTGCATTCATAGTTCATTACAGGAGACATATAGGGGAGCGACCATTCAAATGCAGACAATGCCCTAAATCCTTCCTACTGTTGGGTGCTCTCAATGAACACGTCAGGAGTGTTCACCTGGGACTTAAAAGAAAGAAGCTGAAAGAAAAAGAGCCTGTTGTGCCTGACCCTGATGAGAATGTTAAATTCAAAATACTGAAGGCTGACGAGTACGGTCTCAGAAAGGACAAAGTGCAATGTCTAGAATGCAGGTTGATATGTGAAAATAAATCTGCATTTGTAACTCATTTTAGGAAGCACAGTGGAGAAAAACCTTTTCGCTGTGAGCATTGTGATAAATGCTTTCCTCGGCTCGGCTCACTCAATGATCACATCAAAAAGATGCACGATCCTGACAACCCAAATGCTGGAGATGATGAAAGTAATGAGTTGTATGCAGTCATTAAAGCTAAAGATAATCCTACACTAAATAAGGATATGGTACAATGTCAGATGTGTAAATTATTATTCAATGACAAGTCAGCTTTCAGAATACATTACAGAAAGCATACAGGAGAGAATCCTTTTAGATGTGATCAGTGTACCATGGTGTTCAGAAGAATGATGGATCTTAAGGATCATGTGAAGAAGATTCACGAGAAAAGGGTTTCCCACTACACTCCCAGAAAGGGCTCAGGtggtgaagaaagctgtatttgctatgcatgtggaaagagtttcaaacacaaatcctctctcactattcacatacgtacacacacagatgaaaaaccccacgaatgtacgtattgcgccaaacgattcattcggtcccaagaactctctctccacatccgcatccatcacaccggggagaaaccgtattcatgccatctctgtggaaagacatttgcagcaggcacacaacttaaaagtcatatgtttgttcacactgatgagaagaacttcaattgcaacatatgtaacacatctgttaagactagagactctttagcaaaacacatgagagtaatgcatagtactaggaagaacatctgtgatatatgcggagctgctttcgctttcagatatggtttaagggaccacatgaagaacagacactcagatagatctgaaatatgtgatatatgcaagaaaccattctcagatttagccaggcacatgataacacactcagatcaaaagccatttgggtgccaaatgtgtcaaaaaggtttctTCAGACAAAAAAGTCTCAAGGCCCATTTGGTTAAGCATCATAATGAGCCTCCAATGCTATATATTACTGTCCACAAAGCCTTGAACGGCACGGCACCTCTATGCCTCGCTGAACTCTGTCCCCTTGACGAAACTCTGAGGCGATCAGCTTCCACCGCTGTCAACAAACTTGTGGAGCCCAACAGGGCAAACACTTCCAAATTCGCAGAGAGGAGCTTAAGCGTTGCGGGGCCAACCGCCTGGAATCGATTGCCAGCGGACTTAAGACAGAACCAACCCACTGCAACGTTCAGAAGCAAAAATTGTATACAAAGAAGATCAAAAAGTAGTTGCTCCGACAACTCTGCACCCCCTCCCGGACCTTGTCCCCTCACTCATCATGATCCGTGTACCCCTACTCCCCCCTGTCCACCACCCTCATCCTCTTTGCCAGCTTGCACCCCCTTCTGTGTACCAACTCCTCCACCCTCTCCTTTTTCCTGTTGTTATTACCCATGTCCCTGCCCAACCCCCTGTCCTCTACCATGTCCCCCTGAGTGCCCTACTCCAGGATGTCCTCCTGTCAGTATACCTTGCCCTAACACATGTATTCCAGGATGTGTTCCATCTTGCTATCCATATCCTGTTTGCAATCCTTGTCCAGCTCCGTGCCCCCCTCCTTGTCCTAAACCATGTTTTCCACCTTGTCCGGAACCCTGTATTCCACCTTGCTCTCCTTGTCAAGAACCCTGTCCTCCTCCTTGTTCAGAACCCTTACCTTGTTCTCCTTGTTCGGGACCATGTTCTCCACCTTGCTTTTCCCCTTGTCCACCTTGTTGCCCACCACCTACATGCATCGTATGTAACACTTCCTGTGGTCCTGGATCTTGTCCATGCCCCAATCTTCCCACTTGCTCCCCTTGCTGCCCTCCATTATGCTGTCCTGTTTCATCACCACCATGTGCACATCCTTGTCCCATAGACCCGAATCCTCCTCCAAGTGGATTCATGAAATTTTTAATTATAGGAACCAAATTGGCAGTGTTGTTTGGAGCAATTTTATGGACTCACAATGAGGGTGTATGGAGTAATACATATACCACTGACAAAACATATAGAAGGTGGATAGGGCGGATATTTGGAATACCGAAAGAATTACCATGCTCCTGTGATGATGTAGAACGACTGCCAACTCACGATGATATCAATAATAAAATTTCTGCCAAAATAAATACTGGTGTAGATTCTACTATGAAGAAGATCGATCCATGGGTTAGAAAAGCCAATTTACCTGGATGTAAATCTAAAGATCCAAAAGATAAAGGCAAGAATGATGAGGAACAGAAGTCAAGAACATCACCACTACCCAAAAAAGAAAATTCAGATCCAGGCTGTCTCACCTGCAATGCAAATTAA
- Protein Sequence
- MYSDNESTCRICLSYDVDRVPLFVSHHSKRYDELIKTYTGLEILHNDQLPAEICHQCLSELDVVIKFISKVRSSIEKFNKVLEERSHFSDETKEDEEEKIPLSILGASLKKEKNDYSDEERSYDEPVFGDCGDEPDESKCEETIKNEPDVISLDNLKSLLSNKGGDDFIYVTVNNLTIKKEGIKKEKPLTPDRDIPEITVPIPLQKAVKHKKDKLKKKHRKDKHKTDIDSKYKVLKASEHGLLKDMVKCLICGQVMHNRSAFIVHYRRHIGERPFKCRQCPKSFLLLGALNEHVRSVHLGLKRKKLKEKEPVVPDPDENVKFKILKADEYGLRKDKVQCLECRLICENKSAFVTHFRKHSGEKPFRCEHCDKCFPRLGSLNDHIKKMHDPDNPNAGDDESNELYAVIKAKDNPTLNKDMVQCQMCKLLFNDKSAFRIHYRKHTGENPFRCDQCTMVFRRMMDLKDHVKKIHEKRVSHYTPRKGSGGEESCICYACGKSFKHKSSLTIHIRTHTDEKPHECTYCAKRFIRSQELSLHIRIHHTGEKPYSCHLCGKTFAAGTQLKSHMFVHTDEKNFNCNICNTSVKTRDSLAKHMRVMHSTRKNICDICGAAFAFRYGLRDHMKNRHSDRSEICDICKKPFSDLARHMITHSDQKPFGCQMCQKGFFRQKSLKAHLVKHHNEPPMLYITVHKALNGTAPLCLAELCPLDETLRRSASTAVNKLVEPNRANTSKFAERSLSVAGPTAWNRLPADLRQNQPTATFRSKNCIQRRSKSSCSDNSAPPPGPCPLTHHDPCTPTPPCPPPSSSLPACTPFCVPTPPPSPFSCCYYPCPCPTPCPLPCPPECPTPGCPPVSIPCPNTCIPGCVPSCYPYPVCNPCPAPCPPPCPKPCFPPCPEPCIPPCSPCQEPCPPPCSEPLPCSPCSGPCSPPCFSPCPPCCPPPTCIVCNTSCGPGSCPCPNLPTCSPCCPPLCCPVSSPPCAHPCPIDPNPPPSGFMKFLIIGTKLAVLFGAILWTHNEGVWSNTYTTDKTYRRWIGRIFGIPKELPCSCDDVERLPTHDDINNKISAKINTGVDSTMKKIDPWVRKANLPGCKSKDPKDKGKNDEEQKSRTSPLPKKENSDPGCLTCNAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -