Acin041614.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Athripsodes cinereus
Gene Symbol
Ctcfl
Assembly
GCA_947579605.1
Location
OX388306.1:26475529-26482819[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00028 0.03 16.2 4.8 1 23 207 229 207 229 0.99
2 11 5.6e-06 0.00062 21.5 1.5 1 23 235 257 235 257 0.98
3 11 6.3e-05 0.0069 18.2 2.2 1 23 263 286 263 286 0.97
4 11 0.026 2.9 10.0 3.9 1 21 292 312 292 314 0.95
5 11 0.00011 0.012 17.4 2.1 1 23 320 342 320 342 0.99
6 11 6.2e-06 0.00068 21.4 2.7 1 23 348 370 348 370 0.99
7 11 0.013 1.4 10.9 2.9 1 23 378 401 378 401 0.96
8 11 0.0001 0.012 17.5 1.9 2 23 408 429 407 429 0.96
9 11 0.00026 0.029 16.3 0.7 1 23 435 457 435 457 0.98
10 11 6.9e-06 0.00076 21.2 2.1 1 23 463 486 463 486 0.95
11 11 1e-06 0.00011 23.8 2.2 1 23 500 522 500 522 0.97

Sequence Information

Coding Sequence
ATGTCACTGCGAGAAAGTGTGGAGGAGGATGTAAAGGTGCAGCCTATGGAGCAATCGGAGCTGATACAACATTACTTTAATAATTTACACAAAGAAATTGGAGATGGGAATAATATACAAATACAATTTGCAAATCAAGATGGTGAAGTGGTAGAGGAATGTAATGCCGGAGGGACTTATTATGTGGATGATGATGGCCAGTATTACTATCAACCAGCTGGAGATGGTCAAGCCATTACACCTGTACCACATGAAATATCTCAGTCAATCAATGTGGCTGGACCTATATCGCCAGAAGAAAGCATTTTGTCTGATAATGTTATTCCTAACAATGATGAGGCAATAGCAATGAACCATGATATGAATTTAGCTCCCAACCAAATAGTTACCATTGTTCCAACTGATACTGGGAATGGAGAAGTCAGCTTTGTACTCATTGTCCAACAAGGAGATGAAGCCAATACTAATGAGGAGGAAGTGAATGAAGAGAATGATGTCACTGTCTATGACTTTGATGAAAATGAAGATATTGAGGTTATGGACATGGATGAGCTGGATGATAAATCCAAAATTATTAAAATTAAGTCCAAGCCAATGAGATCTGCAAACTCACAAAGTTATAGTTGTAGTCACTGTACATATACAAGTAATAAAAGGTACTTATTGATTCGTcatatgagatcacattcagatgaaaggcctcacagatgttctgtctgtgacagaggtttcaaaactgttgcatctctacagaaccatatcaaaacacatactggcactaaaccacacaagtgtaAATATTGTGAGAGTGCATTCACAACATCAGGTGAGCTCATAAGGCATGTGCGGTATCGTCACACATACGAGAAGCCTCATAAATGTACAGAATGTGATTATGCTTCCGTGGAACTGAGTAAGCTGAAGAGACATTTGCGTTGTCACACAGGAGAAAGACCTTACCAGTGTGAGCATTGCCCATACGCATCACCTGACACATTCAAACTTaagcgccatctgaggacccatacacaagaaaaaccatatgaatgtaatatttgccatctgaggttTACACAGTCTAACTCTTTGAAGGCTCACTATCTCACCCATAGTGGTGCTGACAAGCCAACCTTCCATTGTAGTTTTTGCCCTGCAACATGTGGTCGTAAAACTGATCTCCGTATTCATATTGAAAAGCTACATACGTCTGTAAAGCCACTTACTTGTAAACGGTGTGGAAAATCATTCCCTGATCGTTACACTTATAAAGTTCATAACAAGAGTCACGAAGGTGAGAAATGTTTTAAATGTGATTTATGTCCGTATGCGTCTGCTTCCCAACGCCATCTCTCATCACACATGCTCATACATACTGATGAAAAACCATTTGCGTGCAATAATTGTGATCAGTCATTCAGGCAAAAACAGTTATTAAAACGTCATCAAAATCTTTACCACAATCCTAACTATGTACCACCATCTCCTCGTGAGAAAAATCACGAGTGTGAGGATTGTGGACGGCAATTTAGGCACAAGGGCAACCTGATACGTCATTTGGCATCTCATGATCCAGATCCTACCTTCCGTGAACAGACTGAAGCATTGAAGTTAGGAAGGCAGAAGAAACTTCATGTTATTGATGGACAAAGGGTGGAGATAATGACTATGAACGAGGAAGATGAAGCTGAAGAGGAAGAGGAGGAGGAAGAGAATGTGGAGCTGGTGACAAGCGAGCCTCATCAAAACAATGAGTATGTTGTGTTGGAGGTTATACAGCTCAAGTCAGAAAATGAGGGGCATCAACAACTAACACATACCAGTGCTAATGCAGAAAGTGAAGGTAGATAA
Protein Sequence
MSLRESVEEDVKVQPMEQSELIQHYFNNLHKEIGDGNNIQIQFANQDGEVVEECNAGGTYYVDDDGQYYYQPAGDGQAITPVPHEISQSINVAGPISPEESILSDNVIPNNDEAIAMNHDMNLAPNQIVTIVPTDTGNGEVSFVLIVQQGDEANTNEEEVNEENDVTVYDFDENEDIEVMDMDELDDKSKIIKIKSKPMRSANSQSYSCSHCTYTSNKRYLLIRHMRSHSDERPHRCSVCDRGFKTVASLQNHIKTHTGTKPHKCKYCESAFTTSGELIRHVRYRHTYEKPHKCTECDYASVELSKLKRHLRCHTGERPYQCEHCPYASPDTFKLKRHLRTHTQEKPYECNICHLRFTQSNSLKAHYLTHSGADKPTFHCSFCPATCGRKTDLRIHIEKLHTSVKPLTCKRCGKSFPDRYTYKVHNKSHEGEKCFKCDLCPYASASQRHLSSHMLIHTDEKPFACNNCDQSFRQKQLLKRHQNLYHNPNYVPPSPREKNHECEDCGRQFRHKGNLIRHLASHDPDPTFREQTEALKLGRQKKLHVIDGQRVEIMTMNEEDEAEEEEEEEENVELVTSEPHQNNEYVVLEVIQLKSENEGHQQLTHTSANAESEGR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00299378;
90% Identity
-
80% Identity
-