Acin048857.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388305.1:24852352-24863303[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.2 5.8e+02 2.7 0.2 2 23 266 288 265 288 0.93 2 12 0.15 16 7.6 2.0 1 23 402 425 402 425 0.86 3 12 3.7e-06 0.00041 22.1 3.1 1 23 431 453 431 453 0.98 4 12 0.0033 0.36 12.8 0.1 1 23 461 484 461 484 0.90 5 12 5.4e-05 0.0059 18.4 2.9 1 23 490 512 490 512 0.93 6 12 5.2e-05 0.0057 18.5 1.2 1 22 518 539 518 540 0.91 7 12 0.00011 0.012 17.4 1.7 1 23 546 568 546 568 0.98 8 12 6.4e-07 7e-05 24.5 0.5 1 23 574 596 574 596 0.98 9 12 0.00041 0.045 15.6 3.6 1 23 602 624 602 624 0.98 10 12 0.0017 0.19 13.7 2.2 2 23 631 652 630 652 0.96 11 12 4.6e-06 0.00051 21.8 1.3 1 23 658 680 658 680 0.98 12 12 2.9e-06 0.00032 22.4 1.9 1 21 686 706 686 707 0.96
Sequence Information
- Coding Sequence
- ATGGAAAATGCGATAGACATTTCTTTGCTGTGTCGATTGTGTGCAGAAGAAAATAAAAATGGAATAATCATTTTTGAGAACGACGAAAGTGACTCAGAATTGTGCGCCACCATCAACAGATATTTACCACTCAAGATACAAAATGACAAAAGTCTACCAAATTCAATATGTCCAGGATGCAACATTCAACTGGAGTCTAGTGTACAATTTCTAAATTTGATAGCCAAGGGACAGTTAATACTCCGTGAAATTTTAAAGGAACAAGCGAAGAATAACAAAATCAATGATCAATTTTTGGTACAAGTTCTAGAAGATGGTACTCTATATGCACCAGATCAAGGCATAACATTAGAAATAGAAGGTCTCACACAACCGAAGAGAAAACGAGGACGTCCCAAGAAGACAAAGCCTCCAACACCACCTCCTGAAGAGGAAATTGCTGAAGACGATAAACAGTTGGCTGAAGAAAATGTACTGGACTCACCAACTACCAGTGACAATGTGGAAGGACGTAAGAGAAAGCGGAAGGCTCCTCAAAGATTTAGGGAAGTTGTTCAGGGCAAGGAATTGGAAAGGATATTCAAAGAAGAAGGTGTTATTGATGAATCTGATGATAATTCGGAATCTGCAGATAAACCAGAACTACAGACTACTGCCCTGAAGAAAGATGATTGGGAAGAAGAAGTCATCGGACACATGGAGACAACTGAAGGAAATTCATTGGGAGAACTGGTGGTTGTGAATAAAACCAAAGGAAGGGGTAGACCCAAAGGTAAAAGCAGATACATAAGGCAGTCATGCAACTTGTGCATGTTAGAATTTTCATCGCTAGGACGTTACATGTCACACATAGCGATTTATCATACCAAAAATGATTTAACACTACTTAAGTCAGAAAATCAGAATTTATTGAATACCTCTGGAAACAAAGATAATCCTCTGGAAAGCAGCTTCAGTAACAACCTTTTCAAAACTGAAACTGAGGGTGTGTTGAGTGCCTCAGATATTCTCAAGTGTAAGGAAGAAACTGGAACAGTTGCACCTATAAGTGTAGAAATAAGACAAGTTAATGAACTTTTAATGAAACCGAGTGAATCGCTGCAAATGTCTGAGAATCTACCGGAGAAAATTCTTGATGGTGAAGAATCTATTCAGGTTGAAAGTTGTAATGATCTGAAAGCAGAAAAACTTCCTGATTCCAAATTCAAATGTACTCAGTGTGATAAAGTGTTCCTCTCCAAACAAAGTTGTGAGGTTCATTTAAAGGCTGCCCATCTAAAAGAACGTCCCTTCAAATGCACAATGTGTGACAAAACTTTCCCATACCAAGTGACACTAAAACACCACATGAGTGTCCACACATCCAAGGGATCCCGGGGCTACGCTTGCGACGAGTGCGGAAAAGTTCTCAGTCATCCTTCTTCTGTGATTTACCACAAAGAGGCAGAACACAATAATGGAAGGAAATTCATATGCATCAAGTGTGGGAAGTCATTCAAACATAAACAGTTGTTACAAAGGCATCAGTTGGTGCATTCCGATAACCGCCCATTTGTTTGTAAGATTTGCAACGCTAGTTTCAAAACCAAAGCCAATCTGATCAACCATCATCCTACACACACAGGAATCAAAAGGTTCACATGTGATATGTGTCAGCAACAATTTGCTCATAAGGCTAGTCTTACACTTCATTTGAGGTGGCATGCAGGTGAGAAGCCATATGCTTGCAGTGTATGCTCGAAGAGATTCAGTCAGAATGGGAACCTTTCTGAACACATGCGGATTCACACAGGAGAAAAACCATATCAGTGCAATATGTGTGACAGAGCCTTTACAACATCTTCTCAGCACCGCCTGCATCTGCAAAGGCACAAGGGTGAGAAACCCTGGCACTGCACCGAGTGTGATAAAAGGTTCTTAAACAAGGAAACATGGAGAGTTCACATTCGTCGTCACAAAGGAGAAAGACCTTTCTCGTGTGAACTTTGTAACCGTAGCTTTACAGAACGCTGGGCATTAAGGAAACATCAGAGGATGCACAGTGGGGAACGCCCGTACAAGTGTGAGATTTGCAATCGGACATTTGCAGATTGCTCCAACCTCACTAAACATAGAAAGGTATTTCTGGACATTCAATTTAAGCCGTTCTTCAGTCATCAGTCACAAGTTACCCACTTCCCAGGAATTGGGAATTTGACATTACCAAGATTTGAAATTGGCAAGCCTTCAGGACTTCCTGATTTGAATGAAGAAGATGACGAAGGACAGCATATTGTGTATGTGACTTTTCAAGAACCTGATGATGACGAAGAAGGAGAAACACCAACCATCCACATTATCAACGAGAGTGATATTCCTGATAGCAATAATATTTTCCAACAAGACACGGGTGATACTGAAAGCTATATGATGAATGCGGATGAAACTATTGCAGATGAACCTGAAATGATTCCTCTGATGTTTGATCAGGTAACAGATGCAGATGGCAATCCAATACATTTTACTACTCAAGATGGGACCCAGCTAGCTATAACTTCAACTGACGGTGGGAAATCTTTACAGGTCACAACAGAAGATGGGCAACTCATTCCAGTACAGTTGAGTGAGAAATTGGATGATGGAGAGAATATGTTGAAGGAGCCTTTGATACTAAGTTCAGAAATTGTAGATGTAGAACCGTCCACATCCGACAATACAATCCAAGTGATGGGTCCTGGAGGGCAGACTCTCAAGTTCCTTGCCACAGTAGATGAGAACAATTATTCTTACTATACATTTACATAA
- Protein Sequence
- MENAIDISLLCRLCAEENKNGIIIFENDESDSELCATINRYLPLKIQNDKSLPNSICPGCNIQLESSVQFLNLIAKGQLILREILKEQAKNNKINDQFLVQVLEDGTLYAPDQGITLEIEGLTQPKRKRGRPKKTKPPTPPPEEEIAEDDKQLAEENVLDSPTTSDNVEGRKRKRKAPQRFREVVQGKELERIFKEEGVIDESDDNSESADKPELQTTALKKDDWEEEVIGHMETTEGNSLGELVVVNKTKGRGRPKGKSRYIRQSCNLCMLEFSSLGRYMSHIAIYHTKNDLTLLKSENQNLLNTSGNKDNPLESSFSNNLFKTETEGVLSASDILKCKEETGTVAPISVEIRQVNELLMKPSESLQMSENLPEKILDGEESIQVESCNDLKAEKLPDSKFKCTQCDKVFLSKQSCEVHLKAAHLKERPFKCTMCDKTFPYQVTLKHHMSVHTSKGSRGYACDECGKVLSHPSSVIYHKEAEHNNGRKFICIKCGKSFKHKQLLQRHQLVHSDNRPFVCKICNASFKTKANLINHHPTHTGIKRFTCDMCQQQFAHKASLTLHLRWHAGEKPYACSVCSKRFSQNGNLSEHMRIHTGEKPYQCNMCDRAFTTSSQHRLHLQRHKGEKPWHCTECDKRFLNKETWRVHIRRHKGERPFSCELCNRSFTERWALRKHQRMHSGERPYKCEICNRTFADCSNLTKHRKVFLDIQFKPFFSHQSQVTHFPGIGNLTLPRFEIGKPSGLPDLNEEDDEGQHIVYVTFQEPDDDEEGETPTIHIINESDIPDSNNIFQQDTGDTESYMMNADETIADEPEMIPLMFDQVTDADGNPIHFTTQDGTQLAITSTDGGKSLQVTTEDGQLIPVQLSEKLDDGENMLKEPLILSSEIVDVEPSTSDNTIQVMGPGGQTLKFLATVDENNYSYYTFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -