Acin018579.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388313.1:19600391-19610202[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0022 0.24 13.3 1.5 2 21 128 147 127 152 0.92 2 14 0.00096 0.11 14.5 0.3 1 19 154 172 154 174 0.96 3 14 0.35 39 6.4 2.7 1 20 182 201 182 203 0.94 4 14 2.6e-05 0.0028 19.4 0.1 2 23 210 231 209 231 0.97 5 14 6.2e-05 0.0068 18.2 2.1 1 23 386 408 386 408 0.97 6 14 0.25 28 6.9 0.1 2 19 417 434 416 434 0.95 7 14 0.093 10 8.2 6.9 1 20 502 521 502 524 0.93 8 14 0.00021 0.023 16.5 1.4 1 23 529 552 529 552 0.96 9 14 7.2e-06 0.00079 21.2 0.5 3 23 560 580 559 580 0.99 10 14 0.00028 0.031 16.2 4.9 1 23 587 609 587 609 0.98 11 14 0.00048 0.053 15.4 0.3 3 23 617 637 615 637 0.97 12 14 0.00013 0.014 17.2 0.9 1 23 643 666 643 666 0.96 13 14 0.011 1.2 11.2 0.3 3 23 680 702 678 702 0.93 14 14 4.9e-05 0.0054 18.5 0.3 1 23 761 783 761 783 0.98
Sequence Information
- Coding Sequence
- ATGTCTGTTGTTTACGGCGAAGAAGACGTAATTTCTAGAAATATAATACCTATTGAGGAAGTTGCAGCGCAGAATACTATAGGAGTAGGAGCTGCCAATGACAAGGGAGAATGCACAAGTAGTATTTACCAAAATCAATATGAAAAACAAGATAAACAAGGAATAAAGATTGAACCCTCACCTCAAATAATACAGAGTAGTGTTCCTTATACAGGAATTTCACCAAATGAAACCTCAAAAGAAGAAAGTGTGGCTGTTGAAGCGTTGTATGAATTGGGAAGTAGAAAGAGCAGTACAGAGAACATTGTAAGTGAACAGGAGATTATAGAGAAACAAGAGATGAGTTGCCAACCAGTCATCACTTCTTCATTCAGACTATTACAATGTGGCATCTGTTCTTCTTGCTTTTCATCTCAAAGTGATCTGGAGTTGCATCAGGAAGTTTGTGATGGACACACTTACTCGTGCACAAAGTGTGATATCACATTCAACACAAAAGATAAACTGGATAATCACGCTGTGTGCCATGAAGTTAGTAGACCATTCTCATGTCGATTATGTGGCTCATTATTTAAGATGAAGAAGCAACTTCAAAGTCATACATGTCTTCAGAAATTAATGGGTCTTGTATGTAGTGTATGTGGCGCGGAATTCTCTAAATTATCCAGTCTAAATAATCATATAAAAATCCATTCTTATCCTCCAGGCAGAGATTTTGTTGTACCAAACTTTTGTGAAACAGTTCTGTCAGATAACAGTGGGTGGGCTCATGATATACAGACATTACCACCTCTAATGCCACAGCTTGATATACAAAACAGTCGGGATATTCCAAATTGGAATGAAAACTTAAACCTTAATGATTCATTAGAAAATAAGGACCTGCATGATTCAATTGATATTGCTCAAGAGATGACAATCAACACTTCATATTCAAGTATTTTAGATGCTCATTCTGCATTTCATAATGACTTTGATAACATGGATGATGTATCTGTCCATTCTGATTCTCTTGAATTAAAACAACAAGTTGAAATATATTCACATACAGATTTAGATGCAAATCAAAGAGGAAGCCACACATCTTCTCATATACCAAACACAGTAGTCGAAATTTCTAATTTTGAATTAAAAGATGAAGTAAAGAAAAAACCTCATACATGCAAATATTGTGGAGTTTCGTTTACAAGAGAAAAGGCATTGATATCTCACGAGCGCTTTCACCAGGATTACCTAACAGATATTTTAGAATGTAAAAAGTGTGGTGGAGTTTTTCTGAACAAAGAAGATCTCAAAGTTCATCCTTGTTCTAAACCTTTGCAAAAAGCATATGTTGTTCAATATCAATCAGATGTACAACCTGAACCTACTAGGAATATTGCAGAAACATCGTCAGGTGATCCTTTGGAAAACAGACGATATGAACAGGACAACAAAAAATATTCTCGAGAGCACTATACCACACGTGATGATTCTCCAACTACAAATCTTAAACTGAGTAAACATACTTGTGAACATTGTTTTAAAAGATTTACAACTAAACAAAAAAAGTTTCGTCACATGTGGATACATCGCAACAAAACATTTTCTTGTGAAGTATGCTCAAATACATTTTCTACTCAAAAGCAACTAAATGAACATAGATTGTCAACACATGAAGGAAACACCCCACACGGCTGTGAGATATGTGGAAAGTGTTTTGCTAGCAGACAGGGTTTATGGGAGCATATGAGGCTTCACAAAGAAGGTTCTGCTCCACACCAATGCAACTTGTGTGGGAAAAAATTTACTAGCAGGCAGGGATATCACATCCACGCCAGGACACATACGGGAGAGCGTCCATATGGATGCAGGTATTGTTGGAAAGCATTCCGTGATGGTGGTACTTTACGCAAACATGAACGAATTCATACAGGGGAAAGGCCTCATGTGTGCCCCATCTGTCACAGAGCATTCAACCAGAAAGTAGTTCTCAGAGAACATGTTAGATGGCTCCACGCTCACCATCATCCAGATCACAACCAGCCATTCATTCCCTGTCCCATACCTGGCTGCCAACACACTCTTACTGATAAAGAAGATCTCTGTGCGCACATAGTTAAACATAGTGACACACAGCCTCAATCTCACGTGGACCGAGCTAAGACAGCACAAGTTAAAATAAAACCAAAACCTTTGGCAAAACTGATAAAACATGATGTGTTTCCTAAGCAGGATGATGTTATGTGTGATGAAAACTTTTATGGATACGATGGTGATACATGTGCAGAATCTCCAGATCATCGTTGTGAGATGTGTGGTGAGACATTCCCTGTCAGGGAGCTGTTACTCTCTCATATTAAAATACATATATAA
- Protein Sequence
- MSVVYGEEDVISRNIIPIEEVAAQNTIGVGAANDKGECTSSIYQNQYEKQDKQGIKIEPSPQIIQSSVPYTGISPNETSKEESVAVEALYELGSRKSSTENIVSEQEIIEKQEMSCQPVITSSFRLLQCGICSSCFSSQSDLELHQEVCDGHTYSCTKCDITFNTKDKLDNHAVCHEVSRPFSCRLCGSLFKMKKQLQSHTCLQKLMGLVCSVCGAEFSKLSSLNNHIKIHSYPPGRDFVVPNFCETVLSDNSGWAHDIQTLPPLMPQLDIQNSRDIPNWNENLNLNDSLENKDLHDSIDIAQEMTINTSYSSILDAHSAFHNDFDNMDDVSVHSDSLELKQQVEIYSHTDLDANQRGSHTSSHIPNTVVEISNFELKDEVKKKPHTCKYCGVSFTREKALISHERFHQDYLTDILECKKCGGVFLNKEDLKVHPCSKPLQKAYVVQYQSDVQPEPTRNIAETSSGDPLENRRYEQDNKKYSREHYTTRDDSPTTNLKLSKHTCEHCFKRFTTKQKKFRHMWIHRNKTFSCEVCSNTFSTQKQLNEHRLSTHEGNTPHGCEICGKCFASRQGLWEHMRLHKEGSAPHQCNLCGKKFTSRQGYHIHARTHTGERPYGCRYCWKAFRDGGTLRKHERIHTGERPHVCPICHRAFNQKVVLREHVRWLHAHHHPDHNQPFIPCPIPGCQHTLTDKEDLCAHIVKHSDTQPQSHVDRAKTAQVKIKPKPLAKLIKHDVFPKQDDVMCDENFYGYDGDTCAESPDHRCEMCGETFPVRELLLSHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -