Acin006640.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388327.1:9230727-9236548[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 1.7 10.7 1.0 1 21 102 122 102 123 0.95 2 12 6.4e-06 0.0007 21.3 0.8 1 23 128 150 128 150 0.94 3 12 2.1e-05 0.0023 19.7 4.0 1 23 156 178 156 178 0.97 4 12 3e-05 0.0033 19.2 1.2 1 23 184 206 184 206 0.98 5 12 0.00039 0.043 15.7 0.3 2 23 211 233 210 233 0.94 6 12 2.5e-06 0.00027 22.6 1.4 1 23 239 261 239 261 0.98 7 12 0.0028 0.31 13.0 5.5 1 23 266 289 266 289 0.96 8 12 6.7e-06 0.00074 21.2 1.3 1 23 295 317 295 317 0.98 9 12 0.13 14 7.8 3.4 6 23 327 344 323 344 0.93 10 12 9.9e-06 0.0011 20.7 1.5 1 23 351 373 351 373 0.93 11 12 3.6e-06 0.00039 22.1 0.8 1 23 380 402 380 402 0.99 12 12 7.9e-05 0.0087 17.9 4.3 3 23 410 431 408 431 0.91
Sequence Information
- Coding Sequence
- ATGGTAGCATTTTCAATTTTGTCTGAAGGCGATCTATTCCAGGCAGATGACGCTGCGACTCTGTTTCTTCTTTCTGCAAATTTAGAGAATGATAGGAGTCTACAATGTGATGTAAATAATTATAAACAACTAGAGAATATGGATGTTAATTACGATGGAGAAACTAATTTACAAGAGAACTACCAGTTTGTTTGTGTCCCTTTACTTGAAAAAGATAATAAAATAATTAAGGATAATTTTACAAACATTGAAGATTTAAATGATGTTGACTCTTTAAAAGCTGCATCAAAAATAGGTTCAAAATATAAATGTCCAAAATGTGAAAGAATATATACATTCTTTAACAGACTTCAAGAACATCTCAAAAACAATTGCGATGTATACTTTTGTAATGAGTGCCCTAAAGTATTTTCGACTAAATTTTCTTTGAAGCAACATGCAGTTATTCACATCAAAACCAAAGATTTTAAATGTTCAGAGTGTAATAAATGTTTCAAAACTGAAAAATCACTTGAAGAACATACCACAGTTCACACTAAATGTCGTCCATACGAGTGTACTGAATGTGGAGCTACATTCTCATTTCGCAAACGTTTGAATAAACACATCTCAAATCATTCTGTATCTTTGTATTGTGAAGAATGTGATAAAAGGTTCATTACTGCGAAAGGTTTTTTACAGCATAGAATAGTTTTTCATAATAAAGAAAAGATACATAAATGTGAAATTTGTTCTAAATCATTATCTACTGCTGGCAGTTTAAAGCGTCATATGTTGAGTCATCAAAGCAAACAATTTAAATGTAACATTTGTTATAAGCTATTTACTCATAAAACATCACTTTTGGATCATCACAATAATATACATTTAAAAACAGCATTATACGAGTGTTTTACATGTAGTAAGTCTTATACAGACAAGAGTGCTCTAAGACTACATATTTTAAAACATTCATCAGAAACTAAACACTGTGTGCCGTGCAATCGTTATTTTAAAAATGAAAGCAATTTTAGTGAACACAAGAAAAGGCATCAAATGGGGAAAATTTATTTTAATTGTATAGTTTGCGACAGAACATTTACAAATCGTTCATCATTAAATGCTCACAAACGTACGCATAACAGTGATGCTAAAACATTCAAGTGCGGTGAGTGTGATAGTGTTTTTAAGACAAAACAGAATTTAGGCACTCATATGATGACACATTTAGATCTTAGGCCTGTATCTTGCATTCATTGTAATAAAAAATTCAGGCAAAGATCTCACCTTATGAAGCATATACGGGGGGTGCATAAGTTTAAGAAAAAAAGTAAACTAATGAAAAATAAAGATATAGTAATTAAGAAAGAAGAAATATCTGGTTTTGAAAATGAAGTCAGAATTAAAAAAGAAGCAAATATTGATGAATCGACAGTTCAAGAATTAAATATTGTAGATGATATAGAAATTAAAACGGAGACAGATATTTTGTATATGATTAAAACTGAGCCGGAATCAATTTTGTAG
- Protein Sequence
- MVAFSILSEGDLFQADDAATLFLLSANLENDRSLQCDVNNYKQLENMDVNYDGETNLQENYQFVCVPLLEKDNKIIKDNFTNIEDLNDVDSLKAASKIGSKYKCPKCERIYTFFNRLQEHLKNNCDVYFCNECPKVFSTKFSLKQHAVIHIKTKDFKCSECNKCFKTEKSLEEHTTVHTKCRPYECTECGATFSFRKRLNKHISNHSVSLYCEECDKRFITAKGFLQHRIVFHNKEKIHKCEICSKSLSTAGSLKRHMLSHQSKQFKCNICYKLFTHKTSLLDHHNNIHLKTALYECFTCSKSYTDKSALRLHILKHSSETKHCVPCNRYFKNESNFSEHKKRHQMGKIYFNCIVCDRTFTNRSSLNAHKRTHNSDAKTFKCGECDSVFKTKQNLGTHMMTHLDLRPVSCIHCNKKFRQRSHLMKHIRGVHKFKKKSKLMKNKDIVIKKEEISGFENEVRIKKEANIDESTVQELNIVDDIEIKTETDILYMIKTEPESIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -