Basic Information

Insect: Athripsodes cinereus
Gene Symbol: -
Assembly: GCA_947579605.1
Location: OX388329.1:11461611-11474020[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.11 12 8.0 0.7 1 23 288 310 288 310 0.96

2 11 1.2e-05 0.0014 20.4 4.9 1 23 350 372 350 372 0.99

3 11 1.5e-05 0.0017 20.1 5.7 1 23 380 402 380 402 0.98

4 11 8.9e-07 9.8e-05 24.0 0.4 1 23 408 430 408 430 0.97

5 11 4e-05 0.0044 18.8 2.8 1 23 436 458 436 458 0.98

6 11 1.1e-06 0.00012 23.8 0.7 1 23 464 486 464 486 0.96

7 11 8.7e-06 0.00096 20.9 1.0 1 23 492 514 492 514 0.99

8 11 9.2e-06 0.001 20.8 0.2 1 23 520 542 520 542 0.98

9 11 8e-05 0.0088 17.9 1.0 1 23 548 570 548 570 0.99

10 11 6.7e-07 7.4e-05 24.4 1.3 1 23 576 598 576 598 0.99

11 11 5e-06 0.00055 21.7 1.4 1 23 604 626 604 626 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.11	12	8.0	0.7	1	23	288	310	288	310	0.96
2	11	1.2e-05	0.0014	20.4	4.9	1	23	350	372	350	372	0.99
3	11	1.5e-05	0.0017	20.1	5.7	1	23	380	402	380	402	0.98
4	11	8.9e-07	9.8e-05	24.0	0.4	1	23	408	430	408	430	0.97
5	11	4e-05	0.0044	18.8	2.8	1	23	436	458	436	458	0.98
6	11	1.1e-06	0.00012	23.8	0.7	1	23	464	486	464	486	0.96
7	11	8.7e-06	0.00096	20.9	1.0	1	23	492	514	492	514	0.99
8	11	9.2e-06	0.001	20.8	0.2	1	23	520	542	520	542	0.98
9	11	8e-05	0.0088	17.9	1.0	1	23	548	570	548	570	0.99
10	11	6.7e-07	7.4e-05	24.4	1.3	1	23	576	598	576	598	0.99
11	11	5e-06	0.00055	21.7	1.4	1	23	604	626	604	626	0.98

Sequence Information

Coding Sequence: ATGGACAAGGTTTCAGAGGTGCCATCAAACCTTTTACAAGCTTGCCGAGCTTGTATGGGTAGAAATAATGTCTTAAAACCATTGTTTTTAGATGAAAAGGTCTCACAACCTTCTCTTACTGAACTAATTTTTTTTGTGACAGGTCTAAAGGTGGATGAAAATGATGGTCTTCCTAATCATGTATGTGTCCCATGTATAGCTATGGCAAAAAATGCATTACAATTCAAAGAAATGTGCCATCAGTCAGACATGAATTTTAGGAAACATCTATCAGCTGGTAACAATGTGATGAATTGTGTGATAAAGAAAGAGTCCGAATACTTCTTGAATGATGAAATAAACTCATTATGTTATGCAGTAAACAATAAGGAGAATGTGCAGCAAGATATAAATCCTTTGACACTTCATGGGTTATATCAGTGTGCGCTTTGTAGTAGCAGTCGATCGCCAAGTGCAGTTTGTCTAGGGGGTCTGATGATAATCCATAAAGTATTGTCACAAGGAATGACCTCCTCTGAGGAGGGCCTTGTGAAGCGAATGAAGAATCACTCTTGGTTGGTCGCTCCACAGATTAGTGATAGCGATAGTGACACACCACTAGCTGAGAAGTTTGATACTCATCATACACCAAGTTCCCCATTCATAGATAAGTCTGATGATGTCTTAAATACTCCTATAGCAGAGAAAATTGAAAATGAAGATTTTAAAAACATATCACAATTCAAAAATTTTGAATTCAACCATAGTAAAGATGATGGTAATTATTTTGCTATGCAAGCAACTTCTGATGAGGATTTTATTAAAGTAGAAATAAATTCTGTGAACCATAGACCTAAATCTCGGAAGAGAAAATTAGAAAAACACTCCTGTAATGTATGTAATTTAACATTAACCAAAGCCCTATATGATGCTCATATGAACACTGTGCATCCTGATGAAAATAAAAATGATAAAAAACATGGTCGTAAAAAGAAGATTGATGGAGTTATAATTGGATCAGATACAAATGGAGATAATGGTGGTGATTTGATTGTTCCTTTGCCCTCATTCAAATGTACACATTGTGAAAGAAAGTTTTCAAAAGAATCATCACTAACCGCTCATCTCAAGAAACACGAAAGTCAATTGAATGAAGTGCATAAATGTGATACATGTAAAAGAGAATTCAAGAGGAGGGCTCATTTAGAAAACCATATGTTAACCCATTTTGTAAATAAAGGTTTCAAATGTAATCTGTGCCCCAAAGCATTTACTCGACAAGACAGTCTTACCATACATCTTGCTAATCATAGAGGTGTGAAGAAACATCAATGCAACTTCTGTGAGAAAGGTTTCAACATGCTATCTACTCTAAAGGATCATATCAGAACTCACACAGGAGAGAAACCCTTCCTTTGTTCTATTTGCGGGAGAGGTTTCAGTCAAAGTACTAATCTTAAAGAACATGTCCGCAGGCATCAAGGGTACAAGCCATTTAAATGTGAATTCTGTAGTCAAACGTTTGTATCAAAAGGTGAATTGGAAGCACATACGAGAAAACACAGTGGTGCACACCCATTTGTGTGTGATGTATGTGGTGGTGGATTTACGACATCGAGTTCTTTAGTAAAACATAAAAGAATTCACAGTGGAGAACGTCCATATCAGTGTGATTTTTGCCCTTTGAGATTCACTGCTTTAGGCACATTGAAGAATCATAGACGCACTCATACAGGGGAAAAACCATACAAATGTCAGTACTGTGACAAAGGATTTGCTCAGAAGAATGACTTGGTATCACATACTCGCACCCATACAGGAGAGCGTCCATATGTTTGTTCAGTTTGTGGACATGCCTTCCGACAGAGTTCTGCTCTCAAAACACATTTTAAGATACACAGTGGTCAAGGAGAAAATATGGTGGGAATTAAACTTGGAGTAGAGATAGGTTCTGAGCCAATGAAACTGATTGACAATATGGTGTGTATATCAAACAATAATAATTATAATTGCTTTATTTTCTCCACATGGAAGCTATTAACATTATACTTCTACTACTAG
Protein Sequence: MDKVSEVPSNLLQACRACMGRNNVLKPLFLDEKVSQPSLTELIFFVTGLKVDENDGLPNHVCVPCIAMAKNALQFKEMCHQSDMNFRKHLSAGNNVMNCVIKKESEYFLNDEINSLCYAVNNKENVQQDINPLTLHGLYQCALCSSSRSPSAVCLGGLMIIHKVLSQGMTSSEEGLVKRMKNHSWLVAPQISDSDSDTPLAEKFDTHHTPSSPFIDKSDDVLNTPIAEKIENEDFKNISQFKNFEFNHSKDDGNYFAMQATSDEDFIKVEINSVNHRPKSRKRKLEKHSCNVCNLTLTKALYDAHMNTVHPDENKNDKKHGRKKKIDGVIIGSDTNGDNGGDLIVPLPSFKCTHCERKFSKESSLTAHLKKHESQLNEVHKCDTCKREFKRRAHLENHMLTHFVNKGFKCNLCPKAFTRQDSLTIHLANHRGVKKHQCNFCEKGFNMLSTLKDHIRTHTGEKPFLCSICGRGFSQSTNLKEHVRRHQGYKPFKCEFCSQTFVSKGELEAHTRKHSGAHPFVCDVCGGGFTTSSSLVKHKRIHSGERPYQCDFCPLRFTALGTLKNHRRTHTGEKPYKCQYCDKGFAQKNDLVSHTRTHTGERPYVCSVCGHAFRQSSALKTHFKIHSGQGENMVGIKLGVEIGSEPMKLIDNMVCISNNNNYNCFIFSTWKLLTLYFYY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -