Basic Information

Insect: Athripsodes cinereus
Gene Symbol: RGM1
Assembly: GCA_947579605.1
Location: OX388305.1:38570043-38573984[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00011 0.012 17.4 3.6 1 23 123 145 123 145 0.98

2 18 1.1 1.2e+02 4.9 1.5 1 23 151 173 151 173 0.94

3 18 1.6e-05 0.0018 20.1 0.7 1 23 205 227 205 227 0.96

4 18 0.0037 0.41 12.6 0.1 1 23 278 300 278 300 0.99

5 18 2.6e-05 0.0029 19.4 0.6 1 23 306 328 306 328 0.98

6 18 0.15 16 7.6 3.6 1 23 683 705 683 705 0.98

7 18 1.6e-05 0.0018 20.1 0.3 1 23 711 733 711 733 0.97

8 18 5.7e-06 0.00063 21.5 2.4 1 23 739 761 739 761 0.95

9 18 1.5e-05 0.0016 20.2 1.8 1 23 1016 1038 1016 1038 0.99

10 18 0.015 1.7 10.7 1.5 1 23 1044 1066 1044 1066 0.97

11 18 3.7e-06 0.00041 22.1 2.2 1 23 1072 1095 1072 1095 0.97

12 18 0.00068 0.075 14.9 1.7 1 23 1104 1126 1104 1126 0.97

13 18 0.0008 0.088 14.7 5.3 1 23 1134 1156 1134 1156 0.97

14 18 0.00044 0.048 15.5 1.7 1 23 1161 1183 1161 1183 0.97

15 18 4.4e-05 0.0049 18.7 2.9 2 23 1190 1211 1189 1211 0.96

16 18 0.0036 0.4 12.7 0.5 2 23 1217 1239 1216 1239 0.94

17 18 6.4e-05 0.0071 18.2 0.8 1 23 1245 1267 1245 1267 0.96

18 18 0.0039 0.43 12.5 5.2 1 21 1273 1293 1273 1297 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00011	0.012	17.4	3.6	1	23	123	145	123	145	0.98
2	18	1.1	1.2e+02	4.9	1.5	1	23	151	173	151	173	0.94
3	18	1.6e-05	0.0018	20.1	0.7	1	23	205	227	205	227	0.96
4	18	0.0037	0.41	12.6	0.1	1	23	278	300	278	300	0.99
5	18	2.6e-05	0.0029	19.4	0.6	1	23	306	328	306	328	0.98
6	18	0.15	16	7.6	3.6	1	23	683	705	683	705	0.98
7	18	1.6e-05	0.0018	20.1	0.3	1	23	711	733	711	733	0.97
8	18	5.7e-06	0.00063	21.5	2.4	1	23	739	761	739	761	0.95
9	18	1.5e-05	0.0016	20.2	1.8	1	23	1016	1038	1016	1038	0.99
10	18	0.015	1.7	10.7	1.5	1	23	1044	1066	1044	1066	0.97
11	18	3.7e-06	0.00041	22.1	2.2	1	23	1072	1095	1072	1095	0.97
12	18	0.00068	0.075	14.9	1.7	1	23	1104	1126	1104	1126	0.97
13	18	0.0008	0.088	14.7	5.3	1	23	1134	1156	1134	1156	0.97
14	18	0.00044	0.048	15.5	1.7	1	23	1161	1183	1161	1183	0.97
15	18	4.4e-05	0.0049	18.7	2.9	2	23	1190	1211	1189	1211	0.96
16	18	0.0036	0.4	12.7	0.5	2	23	1217	1239	1216	1239	0.94
17	18	6.4e-05	0.0071	18.2	0.8	1	23	1245	1267	1245	1267	0.96
18	18	0.0039	0.43	12.5	5.2	1	21	1273	1293	1273	1297	0.89

Sequence Information

Coding Sequence: ATGTCTGGTGATTCAACATACCTGGGAGATGATACGAAAACAAATTTAATTGAAAATGATACAAATATTTGTATGAATGCAAATAGTGGAAAGATTTCTGAATCGAATTTAGAAGTTATAGATAATAATGAAACATTAACCTCTAACGAGACTGCTACGGTTGTAAGATACATTGATGAAAATGTTAAAGCAGAACAAACATGCTCAATTTTGGAAGTGTCTGCAACAAATGTTAAAGAAGTAAACACGTCCATATTAGAATCTAAAGAAGATGATAGAATTAAGAATGTTTATCACTGTTCAAAATGTCAGTTTTCTACACATAAAAGAAAGAAATTTAAAGCACATTGGAAACATCATAATAAATTTCACTGTAATATTTGTAATAAAAAATTTATGCAAGTAGGAACATTGAAACGTCATCAGTTAACGCATAAAGATAGAAAGTATTTCCTCTGCGATTTGTGTGGCCGTGGCTATCTTCACAGTATAAGTTTAAAATATCATAAATTAAGTCACTTGAAGCATAATCCCATTGCCGGGGAAAGAACAAAATATATTCAAGAGAAAAAGAAAAGATTGGAAGATAAAAAGGAAGATGTAGTAAATAAATATCTTTGCGATTTGTGTGGAAAAGTTTTTAAACAAGCTGTGTCGTTAAAAACTCACAGATCGAAGCACATTGAAGATGAATCTGGTAAAGTTACAAAATCAGGCATTGAGGTTATAAATAAAACGAATTTATCATCCGATTTTGCTTATGAAGAGTATTTGAATAAGAAACGTCCAGGCCCTAAACGAAAACATCCATTGCTTGCTGAAAAGAAGAGATTTAAATGTAGTGAATGTCCGTATGCCGCAGCGAGAAGTCGAGATGTTGTGGTTCATTTAAGAACTCATACAGGTGAAAAACCATTTTCATGTAATGTATGTGGTAAATTTTTTTCAAAAAAGAGTGTTGTAGTGCGTCATATGTTAGTACATATGCCACAAAATGGCCGTTTGCATAATAGAAGCATTGATCCAAAAGATTCAAACGATTCAAATAAGAATATTATGGCTTGTAATGAAAAGTTTAAAAGCGTGCCTGATTTGTATCCAATTAACAAACATTTATATGATCCTAGAAAATATGTTGAGAATGTGAGAAATGATAAAAATGTAGAGAAGAGTTTTAGCAATGATACTGTCAATAATACAAACCCATCTATCAAATGTGAAAATGCATTTATGGATGAAACCAAATTGAAATATCCATATTTTGACAATAGTAATAACATTGTATTAGTACACTCTGCGAATGCTGGTTATCAGAACTATCCTGGTGACGAATTTATTTACAGGGAGCAAATGGGAATGCTTTCAAAAGAAATCGCTATTCCTAATTTACATAATCATTCGCAACAAACTAATCTTCAAAATATTGATAGTAGGATCTGCGATGATGCCAATATCTCCGTGGTAAAACATGCAAACAAAAAATTTGAAAATACCAGGAATGATACAAAACAAAAAGGGAAACACAAAAACCAACTACTAAATTGTGATTCCGATGTTTTATCTCATTTTAATTCAACAGATGAAGACAGAAAATATTTAGCAAATACTCAAAATTTGTTCAGTACCTCATTCAGGCAGCAAGTTGATGGCTGCGGTTTTATCCAAAATACAAATAATGTTGTGAACAGTACCTCAGATAATAATATTGATGATGAAAAAACAAATGTGAATGTATCTCAAAAGGATATCAGTAATAATTATACTCGATTAAGGGGAGATTTAGTAAGTGAATCTAATGTAAATGAAGTTGGTTGGATGAGAAGTAAAGATCTCCCATCAAGTGATAAATTTAGAAATAACTCCAATCTGCAAATGGACAAAATTATGTCAAAAGAAAATATTGGTTACAATCAAGTAAGTTCTATTCCTCATGTTGTTCGTATTGATGGTAGAGATATGCAGATCTCTAAAAGAGAGAAAAAAGTCGCTAAATCACCGAAAGAGAAAACCGAGACAAGGAAAAGAGTGAAAGGTGTTAGAATGAAACACAAATGTGATCAGTGTACCTATGAGACATATCTGAGTCGAGATATGCGAGTCCACATGAGGAAGCATTCTGGAGAAAGACCCTTTCCATGTCCAATTTGTGGAAAGAGATTTACTAAAGAAAGTGTTGTCAAAAGGCATCAATCTGTTCATACTGGTTTAAGACCTTTCAGTTGTGAATATTGTTACAAAACTTTTTCACAGCAAAGTAATTTGAAGACTCATAAAATTGCTCATTTTGATGTGGCTACTGGTCTGCTTAAGACCAATATTAAAAAATATAAAGGTAAATCTTCAAGTGATAAAATGAATATTCGTAATATGATGGGAAAAAATGATAAAGAAGTGGAGTTTGAAGAACAAGGTGATGTTTTTGACATGAATGGTGATATAGAAAACGCTGATGAAAATATTGCAGATACTAGACTAAATATGGAAGTAAAAAAGAAAAGAAACAAAGATAGAGTTATGGAATATAGAAAAAGAAATAAAAACAAAGACAAATTTGAGGAAATTGAAACTGTGGATGTGAATGAAATTTTAGTAAAAAGTGAAGTTGATTTTGAATTTAAAGCCGAGTATTGTTCTTCAGACGATGAATGTTTGAGTAAAATTAAAGAAACTTTGATGCAAGGGATTGGTAATGAAGCTGTCGAGGAACCTTTAACTAATACTGTGAAGGAGGAACTAACTGAGGAATGGCAAAATGATGAAAATCTATTTGACGGAGAATTCAAAGATGAATTTAAAGAAAACAAAGAGAAATCTGACAATATTCCAAATGATGTCAATACAAATTCTACTCTCAGTGATATCAAAGATGCCAATAAAGAAGTGATGGATGAAACAGAAAAATTAGAACGAAAGAGACGTAAAAAGATGAAGAAAAAAATTAAGAGACTTAAACAGAAAGAAGTTGGGGAATTAAAAAACAGTTGTGATGTAGAAAAATATGATAGTTTTGTTTCACATAGGATTAATGATGGTGAAAAGACTTTTTTCAAATGTAATGAGTGCCATTATTCTGTAGTAAATAAGAGAGATTTAATTGTCCACATGCGATCTCATTCTGGTGAAAAACTCTTCAGCTGTGATATTTGTATGAAGAAATTTTCAAAACAAAGTGTTGTAAAGCGACACAAGCTGATTCATTTTGGTATTAGACCTTACACTTGTCATCTTTGTGGATTATCCTTCACACAATCTAATAGTCTTAAAAAACACATAGAAATTAAACACGGTGTCGAAGAAAAAGATTTACCTTTTAAGTGCGATATGTGCCCAGCGACATTTGCTCAAGAGAAGAGTTTGAAAACACACAAACATGTGCATTTAAGAAAGAAAAATAATGAATTCACTTGTCATATTTGCGGCAAAGTATTTCCTCACGAATGTAGATTGAAATCTCATCTTTTATTACATGATGAACGTCAATATGATTGTTCTATTTGTTCCAAAAAGTTTTTACGTAAATATGACTTAAAATATCATATGTTGATTCATACCCAAGAAAAGCAATGTGTTTGTCATATTTGTGGTGGAACATTTTCCACTTCGGCAACACTTAAAATGCATTTACGTTCTCACTCCGTCAGTCACTTACCATGTAATATTTGCGGACAAAATTTTGGTAAACCAAATGAGCTGTTGCATCATAAATCGAGGGTCCATAAAATTGTTGAATCTTTTCAATGCACAATGTGTGATAAAAGTTTTGTTAATGAGATTGGATTGAAGAAACATTTTACAGTCCATTCCAGTTCGAAACAACATCAATGTCCAGTTTGTTTGAAACGATTTAAACATCTAGGGCATTTACAAAAACACTTTGTTACTACAAATCATGGCATAATGACAACAGATACTTTTAGTGATGCAATATTTAACAATGAATAG
Protein Sequence: MSGDSTYLGDDTKTNLIENDTNICMNANSGKISESNLEVIDNNETLTSNETATVVRYIDENVKAEQTCSILEVSATNVKEVNTSILESKEDDRIKNVYHCSKCQFSTHKRKKFKAHWKHHNKFHCNICNKKFMQVGTLKRHQLTHKDRKYFLCDLCGRGYLHSISLKYHKLSHLKHNPIAGERTKYIQEKKKRLEDKKEDVVNKYLCDLCGKVFKQAVSLKTHRSKHIEDESGKVTKSGIEVINKTNLSSDFAYEEYLNKKRPGPKRKHPLLAEKKRFKCSECPYAAARSRDVVVHLRTHTGEKPFSCNVCGKFFSKKSVVVRHMLVHMPQNGRLHNRSIDPKDSNDSNKNIMACNEKFKSVPDLYPINKHLYDPRKYVENVRNDKNVEKSFSNDTVNNTNPSIKCENAFMDETKLKYPYFDNSNNIVLVHSANAGYQNYPGDEFIYREQMGMLSKEIAIPNLHNHSQQTNLQNIDSRICDDANISVVKHANKKFENTRNDTKQKGKHKNQLLNCDSDVLSHFNSTDEDRKYLANTQNLFSTSFRQQVDGCGFIQNTNNVVNSTSDNNIDDEKTNVNVSQKDISNNYTRLRGDLVSESNVNEVGWMRSKDLPSSDKFRNNSNLQMDKIMSKENIGYNQVSSIPHVVRIDGRDMQISKREKKVAKSPKEKTETRKRVKGVRMKHKCDQCTYETYLSRDMRVHMRKHSGERPFPCPICGKRFTKESVVKRHQSVHTGLRPFSCEYCYKTFSQQSNLKTHKIAHFDVATGLLKTNIKKYKGKSSSDKMNIRNMMGKNDKEVEFEEQGDVFDMNGDIENADENIADTRLNMEVKKKRNKDRVMEYRKRNKNKDKFEEIETVDVNEILVKSEVDFEFKAEYCSSDDECLSKIKETLMQGIGNEAVEEPLTNTVKEELTEEWQNDENLFDGEFKDEFKENKEKSDNIPNDVNTNSTLSDIKDANKEVMDETEKLERKRRKKMKKKIKRLKQKEVGELKNSCDVEKYDSFVSHRINDGEKTFFKCNECHYSVVNKRDLIVHMRSHSGEKLFSCDICMKKFSKQSVVKRHKLIHFGIRPYTCHLCGLSFTQSNSLKKHIEIKHGVEEKDLPFKCDMCPATFAQEKSLKTHKHVHLRKKNNEFTCHICGKVFPHECRLKSHLLLHDERQYDCSICSKKFLRKYDLKYHMLIHTQEKQCVCHICGGTFSTSATLKMHLRSHSVSHLPCNICGQNFGKPNELLHHKSRVHKIVESFQCTMCDKSFVNEIGLKKHFTVHSSSKQHQCPVCLKRFKHLGHLQKHFVTTNHGIMTTDTFSDAIFNNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -