Acin028435.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388316.1:14421646-14431761[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.3e-05 0.0025 19.6 2.6 1 23 322 344 322 344 0.98 2 13 1.9e-05 0.002 19.9 0.4 1 23 350 372 350 372 0.98 3 13 0.00012 0.013 17.3 0.4 2 23 397 418 396 418 0.96 4 13 0.00078 0.085 14.8 4.4 3 23 427 447 426 447 0.98 5 13 0.0011 0.12 14.3 1.0 1 23 453 475 453 475 0.99 6 13 0.00037 0.041 15.8 8.9 1 23 484 506 484 506 0.98 7 13 4.6e-06 0.0005 21.8 0.1 2 23 513 534 512 534 0.96 8 13 2.5e-06 0.00027 22.6 2.9 1 23 540 562 540 562 0.97 9 13 5.8e-07 6.4e-05 24.6 0.2 1 23 568 590 568 590 0.98 10 13 1.2e-06 0.00014 23.6 1.4 1 23 596 618 596 618 0.98 11 13 0.00059 0.064 15.1 3.2 1 23 624 645 624 645 0.98 12 13 0.00031 0.034 16.0 3.0 1 23 651 673 651 673 0.97 13 13 7.1e-06 0.00078 21.2 4.4 1 23 679 702 679 702 0.97
Sequence Information
- Coding Sequence
- ATGTCCGGAAATCATTCTTTATCTGTTGATGAGCGTGAGGAGTCAAACATAGTCGAAAATGTTGAAGCATTGAATGGTATTCTAGTCGTACAAACTATTAATCCAGACAATAACGAAGAAATATCTGAAGAAATTGAAATAGAACTTCCTTTAGAATTTGAGAAGCTCATATCAGGTGACACAAGTCAAATAGCGAAGTTTTGCCGGACTTGTTTGTGTGAAAAGACTGAAATGCATTCATTGTTCGACACATGGGGTGTTGAGACATTGGCAGAAATGTTGGCTTCATTTGCTTCTGTTCAGCTTGCTTTTGGGGATGGCCTTCCTGAGAATATGTGTCAAGATTGTGTTGAGTTGGTTGGCAAGTGTTATACTTTCAAACAGTTGTGTGAAAGATCTGAATCCATGCTCAGGTTGTTGATTAATCAGGGACATTTACAGACACAAGTGTCAAAAGACAATAGTAGTGAAGCAGAGATTGAAACACAACATAGAACTGTAATAATTAAACATAGCGATAATAATGATGAATATGATAGCTTGGATGTTTCTAAAGAAGATCACTTGGAAAACAAAGACTTCAATGAAGAAATCCATTATCAAACAATAGCAGATGAGAGTCAGGATGAAGTTAACAATTCACCGAGCTGTACTTGCTGTACAAAGTCCTCCAAAGAATCAAGACTCGCTGCGCTTTCAATTACGTCAAATCCCTGTATAACTATTGATCCTAGTGTAAATGTGAGTCCAGAAAAGATAAAGAAAAGGAAATCTCTTGATGATGTTCAGAAAGCAAAAAGGTATAAGATAAACGATGAAAGATTTGCAACTGGTTGTAATTTTGAGAATGAAGATAGATTATCTGAGGGTGTAGAAATTAAAGAAGAAAAAGATGATACACCTCATGATACTGAGGAAAGCATTAACAATGAGACTGGTACAGATTATGCAGAACAATTAATATTCCAATGCACCATGTGTGAAAAGCAATTTATAAGTCAGAAGAAATTGTCACGTCATCAGAAAATACATCTACCAATAAAACCTTTCAAATGCGCTATCTGTGGAAAAGGTTTTAATGAGTCTACAGGTTTAAGAAAACATGAAAGGAATCATAAACGTAAAAAAGAAGCAAACAAGGAGTTACAACTGTTAGAAGATGATGAGGGTGTTATTGATATTAGAATACCTTGTACACAATGCCATCTCACATTTAGTAATGAGAGTGATCTCAGCATTCATCAGGCCATACATGTAGACTACAATGGAAAGAAAATATGTCAGCATTGTAAAAAGCAATTTGACACAACACTTCAACTGAAACGTCACGTACGTACTCACCTATCTGATAAGCCATACAAATGTCGTATTTGTCTCAAAGGTTTTCCGGAGATGGGTTCACTCACCAGACACTTTAGACGGCACACGGGAGAGACCAGAGAAAAGAAGCACGTCTGTAAACATTGTGATAAGGCATATCATGACCGCCATTCTCTGAACATACACATGCGGAAGCACACAGGAGAGCGACCCTGGATTTGCTCCGAGTGTGGCAAAGGATTCATCGACTCCCGTTTACTCAATTCTCATATGAAAATTCACAGCGATAATAAACCATTTGCATGCAAAATGTGTGACAAAACTTTCAAGCACGAGTCTACCTTGACTACACATGTGCGTATCCACACAGGAGAGAAGCCATATATCTGTACTGTGTGTGGAAATGCTTTTGTTCAATCTTCTAACCTGTCTCTGCACATGCGAACACATACATTGGAACGTCCTTATTCCTGTGACAGATGCCCTAAGAAGTTCTCCAGTTCCTCGGCTTTGAGAACACATAGAAGAATTCATACAGGAGAAAAACCTTATTCCTGTAAAATCTGTCAGAAGAAGTTTGCTCGCCATGATCTGTCAGCTCACATGCGTCGTCATACTGGGGAGAAGCCACATGAATGTTCTTTCTGCACTAAGAAGTTCACCACCATTGGGCAGCTCAATTTGCACACTAGAATACACACGGGAGAAAAACCATTTGTGTGTCAGATCTGTCACAAAAGTTGTGCAACATCAAGTTATCTTAAGAAACATATGCTCAGAGCACACAACACAACCTGTATATGGCAATTGCCTCAAGATATACTTAAAGAAGAGAATATTCTTCAATTACCAGTAGATGATAGCAAGGCCAAGGAAGTATTAGCTGACAAAAAGAATATTGGTGTAATTAAAACAGAACCAGCAATTGAAAAATCTACAAGCAATAATGAATTAGTTCCTGTTGACCAAACAGTCGAAAATGTTCCAAGGACTTTGACTACTTATTCGAGTAATATGTTGAATGTTGTGGCAGTGGCGGCATCTAATGGTGAAGTGAGTATTCTGAGTCAAAAAAATGATTTTAACATTTCAACGTTACGGGCTCAAACTGGTGATAATATCAGTACCATAGTGTCCAATACAGAAGAGAAACTTTATCAAATAGATCCAGCATTTCTAAGAATACATCACATTGCTTCCGTTCAAGCTGAACACGTCACTATTGCAGATTTGGGGAACGAAACTCAAGAGTAA
- Protein Sequence
- MSGNHSLSVDEREESNIVENVEALNGILVVQTINPDNNEEISEEIEIELPLEFEKLISGDTSQIAKFCRTCLCEKTEMHSLFDTWGVETLAEMLASFASVQLAFGDGLPENMCQDCVELVGKCYTFKQLCERSESMLRLLINQGHLQTQVSKDNSSEAEIETQHRTVIIKHSDNNDEYDSLDVSKEDHLENKDFNEEIHYQTIADESQDEVNNSPSCTCCTKSSKESRLAALSITSNPCITIDPSVNVSPEKIKKRKSLDDVQKAKRYKINDERFATGCNFENEDRLSEGVEIKEEKDDTPHDTEESINNETGTDYAEQLIFQCTMCEKQFISQKKLSRHQKIHLPIKPFKCAICGKGFNESTGLRKHERNHKRKKEANKELQLLEDDEGVIDIRIPCTQCHLTFSNESDLSIHQAIHVDYNGKKICQHCKKQFDTTLQLKRHVRTHLSDKPYKCRICLKGFPEMGSLTRHFRRHTGETREKKHVCKHCDKAYHDRHSLNIHMRKHTGERPWICSECGKGFIDSRLLNSHMKIHSDNKPFACKMCDKTFKHESTLTTHVRIHTGEKPYICTVCGNAFVQSSNLSLHMRTHTLERPYSCDRCPKKFSSSSALRTHRRIHTGEKPYSCKICQKKFARHDLSAHMRRHTGEKPHECSFCTKKFTTIGQLNLHTRIHTGEKPFVCQICHKSCATSSYLKKHMLRAHNTTCIWQLPQDILKEENILQLPVDDSKAKEVLADKKNIGVIKTEPAIEKSTSNNELVPVDQTVENVPRTLTTYSSNMLNVVAVAASNGEVSILSQKNDFNISTLRAQTGDNISTIVSNTEEKLYQIDPAFLRIHHIASVQAEHVTIADLGNETQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -