Acin026131.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388322.1:3575537-3586591[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00014 0.015 17.1 0.4 1 23 134 157 134 157 0.97 2 14 0.017 1.9 10.6 2.2 1 21 164 184 164 186 0.95 3 14 5.7e-05 0.0062 18.3 1.9 1 23 192 215 192 215 0.98 4 14 1.9e-06 0.0002 23.0 2.4 1 23 222 244 222 244 0.98 5 14 0.00049 0.054 15.4 4.2 1 23 249 272 249 272 0.96 6 14 0.00028 0.031 16.2 2.5 2 23 281 301 280 301 0.97 7 14 5.5e-05 0.0061 18.4 7.8 1 23 307 329 307 329 0.98 8 14 4.2e-06 0.00046 21.9 0.7 1 23 335 357 335 357 0.98 9 14 1.7e-06 0.00019 23.1 2.3 1 23 363 385 363 385 0.99 10 14 4.5e-05 0.0049 18.7 0.5 1 23 391 413 391 413 0.98 11 14 6.3e-06 0.0007 21.3 5.4 1 23 419 441 419 441 0.98 12 14 7.3e-07 8e-05 24.3 0.8 1 23 447 469 447 469 0.98 13 14 0.00058 0.063 15.2 2.9 1 22 475 496 475 499 0.91 14 14 7.4e-05 0.0082 18.0 1.6 1 23 526 550 526 550 0.93
Sequence Information
- Coding Sequence
- ATGAAGACTGACAATTCTGAAGAAGAAATAGTCTCTAATGGGGAGACTTCAGATGATTACAGTTCTAGTGAGACTGACGGAGAGATAGAGCTGCCTATTGAGATGGATAATGAAAATGAAAAACAGCAAGATGATAATGGGAAGGCTTCTGAACAATTTAAACTGCCGGATATTCAACTGCCTGAAGGAGAACCCATTTCTGTTGTTTCTATTAAACAGGAATATGATGAAGATGAAGAGATGTACTTCAGGGATGAGGAGATGGAAGAACAGAATGAAATGGAGGAGAAGAAAGATGATCCCTCAACAGAACAACAGGGGAATAAGTCTGGCAAAAGAAAGAAAGCCAAACCTGAAGTGACGGAGGAAGATTTAACAAAGATAAATATAAGATTCTCTTTTGTATGTCAACTTTGCGATGAGAAATGTGACAATCCTGCTTCCCTGACTGCTCACATCCAGAAATCACATGCGGACCAAATTGGGACGTACATGTGTGCGACATGTCAGAGGGTCTATCAAACTGTAGAACATCTCAGAGCCCATATGTTGTGTCATATACAATTGGGAACTTACGAGTGTCCAGACTGTAAGAAGATATATCATCATCCAGCAAGTCTAGTGTCACACAGGAGGCGATGGCACAGAAAGGAAGGCGAGCCTCACGAGTGCAAAGAGTGCGGTAGAACATTTAACATTCGTAGTGATCTCAATACACATATGAAGTCACATGTACAGGAGACATTTTCATGCAAGTATTGTGAGAAGGCTTTCAGAACTGACAGATATCTTCGGTTACACACAAGACACGTTCACTTTGGTCACAAGCATTTGAAGATGGAATGTAAAATATGCCACAAGAGTTTTCAAAAGAAGAGTATGGTGGCGCACATGAAGATACACCAAGTGGGCAAGTTACACAAGTGTCATTATTGTGGCAAGTGCATGACAACACAATACAGTCTCATGGCACATATACGAAGGCACGAAGGTGTGAAGCCGTTTGTCTGCCAGATTTGTGACAAAGGTTTTGTGGATAAAGGGAAGTTAGTCCGCCACATCCATTCCCACTCGGGAACTAGAGATTTCCAGTGCGAGATCTGCAATAAAACTTTTTCTGAGAGACAGTACTTGCGGCAGCATAGGAGGATACATGAGGAATCTAAGGACTATCCGTGTCGCATCTGTGGCACAATGTTTAAGAGTATGAACTCTGTATGGTCTCACATGAGGAAGCACACGCAGTCAGACAGGTACAAGTGCAAGCAGTGCGGGAAGACTTGCTACAGGCCAGACCATCTGCGCTCCCACATGGTGAGCCATACAGGTGTGAAGGAGTTCCAATGTGAGATATGCAGCAAGAGATTTGCCAAGTCGTATGATCTTACGGAGCACATGAGGGGCCACAGCGGGGAGAAGCCATACTCCTGTACACTGTGTGATAGAGCATTCGCAAGACATGGGGAATTTAGGAAACACAAGATGAGTAAATACCATCGTGAACGGGAGATAGAAGCAGGATTACCTCCATCATTTCCAACTCCACCACCAAGACCTGCTAAAGGGTCTGCTCGTCATCAGTGTGGATCTTGCGATAAGAAATTCTCCACAACATCGGGGTTAGCGGCGCATCTTCGCAGAAAGTCCCACGTTGCTAAAGATTTCTCTCGAGAGGATACATATCATGATGCAGAAGGATTTGAAGAAAACCAAAATGACAATGAAATGCAATCCGTTCCTGTTCTCCAAGAGATCCCGACAACACATCACAATGTGAATATTGTTAATCATGCAATGATACGAGAAAGTAGAAATGATGATTTGGAAGGTCTTAATGCATAA
- Protein Sequence
- MKTDNSEEEIVSNGETSDDYSSSETDGEIELPIEMDNENEKQQDDNGKASEQFKLPDIQLPEGEPISVVSIKQEYDEDEEMYFRDEEMEEQNEMEEKKDDPSTEQQGNKSGKRKKAKPEVTEEDLTKINIRFSFVCQLCDEKCDNPASLTAHIQKSHADQIGTYMCATCQRVYQTVEHLRAHMLCHIQLGTYECPDCKKIYHHPASLVSHRRRWHRKEGEPHECKECGRTFNIRSDLNTHMKSHVQETFSCKYCEKAFRTDRYLRLHTRHVHFGHKHLKMECKICHKSFQKKSMVAHMKIHQVGKLHKCHYCGKCMTTQYSLMAHIRRHEGVKPFVCQICDKGFVDKGKLVRHIHSHSGTRDFQCEICNKTFSERQYLRQHRRIHEESKDYPCRICGTMFKSMNSVWSHMRKHTQSDRYKCKQCGKTCYRPDHLRSHMVSHTGVKEFQCEICSKRFAKSYDLTEHMRGHSGEKPYSCTLCDRAFARHGEFRKHKMSKYHREREIEAGLPPSFPTPPPRPAKGSARHQCGSCDKKFSTTSGLAAHLRRKSHVAKDFSREDTYHDAEGFEENQNDNEMQSVPVLQEIPTTHHNVNIVNHAMIRESRNDDLEGLNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -