Basic Information

Insect: Athripsodes cinereus
Gene Symbol: -
Assembly: GCA_947579605.1
Location: OX388322.1:56717-58240[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.4e-06 0.00037 22.2 0.6 1 23 106 128 106 128 0.97

2 14 2.7e-06 0.00029 22.5 0.4 1 20 134 153 134 156 0.95

3 14 3.1e-05 0.0034 19.2 2.4 1 23 165 187 165 187 0.96

4 14 7.8e-06 0.00086 21.0 2.2 1 23 193 216 193 216 0.97

5 14 5.4e-05 0.0059 18.4 2.8 1 20 222 241 222 244 0.96

6 14 1.2e-05 0.0013 20.4 0.8 1 23 250 272 250 272 0.98

7 14 0.02 2.2 10.3 1.6 5 23 281 299 278 299 0.95

8 14 0.00015 0.016 17.0 1.9 1 23 305 327 305 327 0.97

9 14 9.5e-06 0.001 20.8 2.2 1 23 333 355 333 355 0.97

10 14 0.0012 0.13 14.2 8.0 1 23 361 383 361 383 0.98

11 14 1.2e-05 0.0013 20.5 3.6 1 23 389 411 389 411 0.97

12 14 0.00012 0.013 17.3 0.2 1 23 417 439 417 439 0.97

13 14 3.9e-08 4.3e-06 28.3 1.1 1 23 445 467 445 467 0.98

14 14 0.0022 0.25 13.3 3.8 1 23 473 497 473 497 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.4e-06	0.00037	22.2	0.6	1	23	106	128	106	128	0.97
2	14	2.7e-06	0.00029	22.5	0.4	1	20	134	153	134	156	0.95
3	14	3.1e-05	0.0034	19.2	2.4	1	23	165	187	165	187	0.96
4	14	7.8e-06	0.00086	21.0	2.2	1	23	193	216	193	216	0.97
5	14	5.4e-05	0.0059	18.4	2.8	1	20	222	241	222	244	0.96
6	14	1.2e-05	0.0013	20.4	0.8	1	23	250	272	250	272	0.98
7	14	0.02	2.2	10.3	1.6	5	23	281	299	278	299	0.95
8	14	0.00015	0.016	17.0	1.9	1	23	305	327	305	327	0.97
9	14	9.5e-06	0.001	20.8	2.2	1	23	333	355	333	355	0.97
10	14	0.0012	0.13	14.2	8.0	1	23	361	383	361	383	0.98
11	14	1.2e-05	0.0013	20.5	3.6	1	23	389	411	389	411	0.97
12	14	0.00012	0.013	17.3	0.2	1	23	417	439	417	439	0.97
13	14	3.9e-08	4.3e-06	28.3	1.1	1	23	445	467	445	467	0.98
14	14	0.0022	0.25	13.3	3.8	1	23	473	497	473	497	0.93

Sequence Information

Coding Sequence: ATGGGGTCTTTAGGGGCGGGTGCGGAGGAGCAGCTGCCAGTCGAGTGGGAAGTCAAGACTGAGCCAGTGGAGGAACTACCAGGGAAGGAGCTGCCAGTGGAGTATGAGGAGACGGAGGAGGTGTACCACGACGACCAGAGCTGCAGTGAGAGTGAACAGTATGATGCAGGAGATCAAGAGGACGATAGAGACAACTACATTGGAGGAGTGGTGGCCGGCAACAGTGAGAATGTCTCCACAGTGTACAGTGTGGCGGGGGAGGGGGAGGAAGAGAGACCAAAACGCAGAAAGAGAGTGCGCAACAAGGAAAAGAAGTTCCCCTGTGAAGTGTGTGGGAAGATGTTTGCCACAACAAGTCACATGAAGAGACACGCCTTGGTGCATGGAGGGCAACGTCCCTACCAGTGTGAGATCTGTCAGAAGAGATTCACCCAGGCCAGGGACCTCAACAATCACATGTGGGTTCACAACACAAGTGGAGGACAGAAACCTCATCAGTGTGACATCTGCGGCAAAAGGTTTGTGCAGCTCTTACATCTTACAAACCATCGCCTTGCACACAATGGAGGTGGCCGGCATGAGTGTGAGCAATGTGGTCGCAGATTCATTCAAGCTGCTCACCTCAAAACACACCGTCTCACCGTTCATACAAATGACAAGCCATTTCAGTGCTCTGTATGTCCCAAGTCTTTTGTGTACGCTAGCTATCTGAAGGAACACATGTTTTGCCACAGTATAGAGAAGGTATTTGAGTGCGAAGAATGTGGAAAGAAGTTGAATCGAGCATACTCCTTGAAACTTCACAAGATGACACACAGTAAGGAGCGACCGTACCAGTGTCATTGTGGAAAGAGTTTTCTCAAACCAAAAGAGCTACAGAACCACACCATGGTCCATACGGGAGAGCGGCCGCATCAGTGCGACCTCTGCGACAAGAGATTTATGCTACAAGCACAATTGAAGCAACATAGACTTATCCACACACATCAGAGAGAGTTCACTTGCCAGGAGTGTGGTATGAAGTTCTCCCAGAGCAGCCAGCTTAAGATGCATAGCTTTACTCACTCAGGAAATTCTCCTCACAAGTGCAATGTATGCAACAGACATTTTGCCTTTCCGTGCCATTTGAAAGAGCATATGTTGGTGCATCAAGAATCTGATCAATTTGAATGCGAGGAATGTCACAAGAAGTTTAGCCATCCCAACAGTTTAGCACGTCATCGTCTTCTGCACTTGGATTATAAGCCATTTGTGTGTGACATTTGCAGTAAAGCTTTCACCTTAGTGAGTGGTCTCAACAAACATAAACTAATACACAGTTCAGAGAATCCCTTTGTATGTGCGGAGTGCGGTAAAGCCTTCACCCAGTCCAGCCATCTCATCAGACACAGGCTCACCCACACGGGAGAGAAGCCGTACGCGTGCAGCCAGCCTTCCTGTCACAAGAAATTCTCTCAGTTCTCAGACATGAAGAGGCACCTCACAAAACATAATGTGACAAGTGACAAACACTCACTCACATAA
Protein Sequence: MGSLGAGAEEQLPVEWEVKTEPVEELPGKELPVEYEETEEVYHDDQSCSESEQYDAGDQEDDRDNYIGGVVAGNSENVSTVYSVAGEGEEERPKRRKRVRNKEKKFPCEVCGKMFATTSHMKRHALVHGGQRPYQCEICQKRFTQARDLNNHMWVHNTSGGQKPHQCDICGKRFVQLLHLTNHRLAHNGGGRHECEQCGRRFIQAAHLKTHRLTVHTNDKPFQCSVCPKSFVYASYLKEHMFCHSIEKVFECEECGKKLNRAYSLKLHKMTHSKERPYQCHCGKSFLKPKELQNHTMVHTGERPHQCDLCDKRFMLQAQLKQHRLIHTHQREFTCQECGMKFSQSSQLKMHSFTHSGNSPHKCNVCNRHFAFPCHLKEHMLVHQESDQFECEECHKKFSHPNSLARHRLLHLDYKPFVCDICSKAFTLVSGLNKHKLIHSSENPFVCAECGKAFTQSSHLIRHRLTHTGEKPYACSQPSCHKKFSQFSDMKRHLTKHNVTSDKHSLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -