Acin024493.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388311.1:14252272-14252763[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.7e-06 0.0015 19.6 0.0 12 37 26 51 18 58 0.87 2 2 2.9 5.7e+02 1.8 0.0 22 30 142 150 128 151 0.77
Sequence Information
- Coding Sequence
- ATGTCGGGTGGATTTGAAAGAAAGACCCTTCGGGCGTCGTGGAGCGCACAGAACCTCGATgaagatatgaagaaagtggaaaataaagaaatgggagtgaacgaggcctccagagctcataaaattccttccagaacactaagaaggcatcttattacgcgcaaacctaaaggcccccttggacgcaatccggtatttaaagtggagtacgagaaaaaactagtggcacatataaaaaaattggaaaaagtaggatttgcatctgataggaaagacgtaaaagTCATGGCCTATCAATTAGCTAATAATCTAAATGTTAAAAATTTATTTTCAAATGAATCTAAGACAGCTGGCAACAAATGGTTTAGTAATTTCATGGCCCGAAACCCCGAACTGAGTCAGAGAAAGTCAGAAGGCCTATCTCTGGCTCGGGCATACGGGGTGAACAGAAAGGACGTTGACAAATTTTTCACACTAGTCAAATTTACATAG
- Protein Sequence
- MSGGFERKTLRASWSAQNLDEDMKKVENKEMGVNEASRAHKIPSRTLRRHLITRKPKGPLGRNPVFKVEYEKKLVAHIKKLEKVGFASDRKDVKVMAYQLANNLNVKNLFSNESKTAGNKWFSNFMARNPELSQRKSEGLSLARAYGVNRKDVDKFFTLVKFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01012163; iTF_01012159; iTF_01012183;
- 90% Identity
- iTF_01012163; iTF_00179168; iTF_01012159; iTF_01012160;
- 80% Identity
- -