Acin034398.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388324.1:3075065-3076765[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.2e-07 0.0001 23.4 0.0 1 42 16 57 16 60 0.89
Sequence Information
- Coding Sequence
- ATGTCTGAATTAAACAAAAACTATAGAGGGAAGTATGGAAGCTGGTCTGAagatgatttacaaagagccatagcagcatataaaaacggagactatggattaaacgagtgtgcgagaaaatattgtgtgccaaaagcaaccataagaaggtacgcccttgaaaaaaatactaacaagaatggagtgaaggtattgggtaggcagtctacgttcgatactgaaatggagaaacttctgactgatcatgtcctcgaacttgaacgttctttttttggtctatcaattaaagaactttgtaggctagcatttgatcttgcagagaaacaaggcttagcccatacatttaacaaagagaagaaaatggcaggaaagaaatggttttatagttttatgaaacgaaatccttcacttagtgttcgacgcccggaatcgacttccttggccagagcaaaaggttttaatagggaaaacgttgaccacttctttgacctattagaaagtaccgttataaaatttgaaataacaggtgatcggatgttcaatgttgatgaatccggatacaccacagtacaaaagcgtccacaaaaaatcataggcgagaagggaaaacaccaaataggagccattacgagtggagaacgtggCGTTAACACAATAATGGTTTGTGCAGTGAGTGCTGCAGGTGTTTATATCCCGCCTATGATAATATTTAAGGGAAAAAGATGGAATGATGACTTGAAGATCGGAGCGCCTCCGGGAagcatagtaaagatgtccgatacgggatacatcaattcggaattgtttgttgagtggctgaatcattttaaaaatcacacgaattgcagtaaagagaacaaaattctccttttgctggatggacatacaacgcacagcaaaaatcttgcagcttgggaaatagcgagggaaaatggcatcattttgcttcagttacctggtcacacaacacaccgtccattacaaagttatttcatccaagcacaagaaaagttcctacatacatacaaaggtcatcagattaaacatacaaatattgcaacacttctaaatgaagcgtacgggagagctgccaccgtaggaaatgctcaaagcgcatttcgggccccaggcatatggccagtaaatcgtcacgttttccaagaccatcattttgctccagctgacgttcttcttcctgagccacctgAACAACCGTCCAACATTGTACCAACAACATCATCCTTAACACAAGCGGATTCTGAATCTTCAGATGAAATTGACGACAGCGACAATGATGCCAACTACCAACCAAAAAAAAAATATAGAAAATTCATAAATGTGCTAAATGAAATATCACCCAAGCCGAAACTTTCGAGGAATCCACATAGTACCACAAGAAAGCGAAGATGCGGTGATGGGAAAGCACAGAAAGCAGTTCTTATAACTAGCAGTCCATACAAAATAGAATTGGAACAGATGAAAGAAAGAGGAAAAAAGAATGAAGTAAATAAAAAATCGAACATGCCATCAACCAGCAAATCTGAAGACATAATTGAATCTGAATGGTATTGTTTTCTTTGCAATAAAATTAAAAAAGGTAGCATGATCCAATGCATGTTATGTGAAAAATGGGTGCACATAAAATGTGCACGTATAAAAGCCAGCGAAAAACAATTTTTCTGTTTAAAGTGCATCGCTTAA
- Protein Sequence
- MSELNKNYRGKYGSWSEDDLQRAIAAYKNGDYGLNECARKYCVPKATIRRYALEKNTNKNGVKVLGRQSTFDTEMEKLLTDHVLELERSFFGLSIKELCRLAFDLAEKQGLAHTFNKEKKMAGKKWFYSFMKRNPSLSVRRPESTSLARAKGFNRENVDHFFDLLESTVIKFEITGDRMFNVDESGYTTVQKRPQKIIGEKGKHQIGAITSGERGVNTIMVCAVSAAGVYIPPMIIFKGKRWNDDLKIGAPPGSIVKMSDTGYINSELFVEWLNHFKNHTNCSKENKILLLLDGHTTHSKNLAAWEIARENGIILLQLPGHTTHRPLQSYFIQAQEKFLHTYKGHQIKHTNIATLLNEAYGRAATVGNAQSAFRAPGIWPVNRHVFQDHHFAPADVLLPEPPEQPSNIVPTTSSLTQADSESSDEIDDSDNDANYQPKKKYRKFINVLNEISPKPKLSRNPHSTTRKRRCGDGKAQKAVLITSSPYKIELEQMKERGKKNEVNKKSNMPSTSKSEDIIESEWYCFLCNKIKKGSMIQCMLCEKWVHIKCARIKASEKQFFCLKCIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -