Acin013394.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388319.1:4617822-4619549[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-08 2.7e-06 28.4 0.0 1 40 15 54 15 57 0.93
Sequence Information
- Coding Sequence
- ATGCCACGAAATTATGTACGAAAAACATCTCGACAGGGATGGGATGAAGGAGCAATGAATCAAGCAATCCAAGCTGTAAAAAATGGAGAAATGGGATGGCTGCGTGCTTCTAAAACATTTAAAATTCCTCAAGCTACTTTAAGACGTCACGCGAACGAGTCAAACAAACGCATCAAACCTGGAGAAAAAAAACTAGGAAGATTTATTCCAACTCTTCCCTTggaaatcgaacttgatttagtaagtcatataaaattattggaaaccagactttttggtttaactcggattgaagttcagaagttagcctaccaactggcagtaaaaaatggtgtagaaaataacttcaaccacgaaaaaaaaatggctgggaaagactggctgagaggctttagaaaaagacatccagacatttgtctccgaaagccagaatcaacatcggctgcacgagcccaggcgtttaacaaaccgcaagttgaaaattattttaagattcttgcggataccataaaaaatgaaaacatcgacccccttaaaatatataacgcagatgagtcagcactttcaaccgtacaccgaccacagaaaatatttgcaacatcagggagaaagcagattgggactgtatcaagtgccgaaaggggatcacacacaacagttgtttgttgcatgggaacaaatggaaattatgttccaccttgcctcatttttgctagaaaaaatatgaaaaatgaacttttggaccatgcacctccaggaacactaggccttgtccatgagaaaggttggatgacgggtcctgttttcgtcaaatggttggagcattttcagaagtatgtgaaagcctccccaattgaaaaagttctccttattttagatggacattctagtcataaatatttggaagctttaatttatgcaaaagaaaatggaattattttattctgtctaccaccacattgcacgcacagactgcaaccactagatgtcgcattttttgggcctttgaaaacttatttcaatcaagaaattggaaaatggctgaaaaatcatcctggaagggtagtaaccgcgtttcaagtaggctctttatttggtgaggcttatgggaaggctgcaacagtacaaaatactatcagtggttttgctaagacaggaatatggccctttaattcagatatttttcctgatcacatgtatgaaccctctgaaacaacaaatattccGATTGCCACCGAAAACAACAATAATGAAATCCCTTATTCGTGTGTAAATAATCAGATTATTGGGTCTGACACATTGGTCACTAACCTCAATGATAAACCATCGACATCAAGAGTTGTTACTTCAGTGGATATAAGCCCGATTCCAGTTGGAACTTTTATTTCAGGCCTTGGTAAACGAAAACCAAGAAAACGACAACCCACTAAGATTTTAAACACAACTCCTAACATTTTGGAGGCTAAAGAAAAGTCATGTAAAATTATCACTGAACGTGATAAAAAAAAAATTAGTAGAAAAATATTGAGTAAATCAAATATAGAAGAAATTTTGATGGTTTCAGACGATGATAGTGACTGTGCCTGCATTTACTGCAATGAGAAATATAAGAAATCAAAACCAGGTGAAACATGGCTTAAGTGTATGAAATGTGGAAATTGGGCCCACGCAGAATGTGCTGGATTGAATAAAAAAGCCAAAATTTTCGTATGTGAATTGTGCTCATAA
- Protein Sequence
- MPRNYVRKTSRQGWDEGAMNQAIQAVKNGEMGWLRASKTFKIPQATLRRHANESNKRIKPGEKKLGRFIPTLPLEIELDLVSHIKLLETRLFGLTRIEVQKLAYQLAVKNGVENNFNHEKKMAGKDWLRGFRKRHPDICLRKPESTSAARAQAFNKPQVENYFKILADTIKNENIDPLKIYNADESALSTVHRPQKIFATSGRKQIGTVSSAERGSHTTVVCCMGTNGNYVPPCLIFARKNMKNELLDHAPPGTLGLVHEKGWMTGPVFVKWLEHFQKYVKASPIEKVLLILDGHSSHKYLEALIYAKENGIILFCLPPHCTHRLQPLDVAFFGPLKTYFNQEIGKWLKNHPGRVVTAFQVGSLFGEAYGKAATVQNTISGFAKTGIWPFNSDIFPDHMYEPSETTNIPIATENNNNEIPYSCVNNQIIGSDTLVTNLNDKPSTSRVVTSVDISPIPVGTFISGLGKRKPRKRQPTKILNTTPNILEAKEKSCKIITERDKKKISRKILSKSNIEEILMVSDDDSDCACIYCNEKYKKSKPGETWLKCMKCGNWAHAECAGLNKKAKIFVCELCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00179205; iTF_00179208; iTF_00179209; iTF_00179210; iTF_00179211; iTF_00179212;
- 90% Identity
- iTF_00179208;
- 80% Identity
- -