Acin029174.1
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388316.1:25781056-25783023[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.5e-09 1.3e-06 29.4 0.0 2 39 16 54 15 60 0.87
Sequence Information
- Coding Sequence
- ATGGTTCGCACGTACAAAAGAAAAACAGCAAGGTCTGACATAAATGAAGAAACAATCCAAGAAGCATTATTGGAAATAATAGAAAAAAATATATCTTTGAGAGATGCTGCAGCAAAATATGGGATAAAGAAATCAACACTACACTACAGGCTTAAAAAAAACAGGGATCCTTTATCTAATCCGAAACCCGTCTTAACATCTAAATATGCAAGCCGAAGTGTATTTAATAAAAATGAGGAAGATTTACTCACAGGttgtcctgaaaaaaacacttcctccgtattgggaatcccacaaagggctggggtggaatggattaaagggtttatgaagaggaatccagagttatctctgcgtaagccagagagtactagcctgtcgcgtgccacaagtttaaataaaacgaatgttgaagatttttttcaaaactatgagaagatgttaaaaaaacataactttacagccagttccatatacaacttggatgaaacaggtgttcatacagtattaccaccaccaaaaataattgccacaagaggaacgaaacaagttgggcaagccgtatctgcagaaaggggagaacttgtgacagtcatgtgcataataaacgcgctaggtggaacacttcctccagtcttcgtatttcctcggatgcgttataaacacgtattccttaacggagccccagctgggagcttaggcctagcgaaccagagcgggtggatgaattccacatgttttctcgaagccatgagacacatcaaattgcacacgagatgttctaaagaacacccgattttggtattaatggacaatcatgagtcccacacatcccttgaagccatattatacggcagagaaaatggaattgaattactttcatttcctccacactgcagtcacagaatgcaaccgttggatgtggctttatacgggccttttaaatcatacttacgaacatcgttcaataactggctactttctaatcctggacgcacaatcaccatttacaatatccctgaacttgtcaataccgcatacacatcagcattttcaataaaaaatattttatcggggtttaaaaaaacgggaatttggccagttaaccgatgcgagtacactgatgaggaattccagtctgcatacgtatcagatcaacctactccTATGAGCGAACCGATTTCTAGTAATGCTATTGGGAACACTGCGACCGACACTGAGACCGAATCTACTCCTCATTGTAATAATAGTACAGAACAAACAATATGCTCACCAGCCACGACCTCTCTGGTAACAATAATATCACCTCAAATGATTAGGCCATTCCCTAAAGCGAGGCCAAGAACGGGCACACGTGGAAGGAAAAAGGGGAAATCATCTATTCTAACATCAACTCCCGAAAAGGACAGAATAATGATGCTTCGAAAAGAAAAAGATGAAAAGAAAAAACGGTTGTTGGAGAAAAGCATGAAAGGTAGATCAAAGTATGGAATTAATGATTATGTTCTTGTGAGATTTACGACAAAGAAAAATGTATATCATTATGCTGGTCAAGTCAAGGGAAAAACAGGTTGTGATTACAAAATAAACTTTTTAAGGAAGAATGAAGGTTCATTTTTTTTTCCAATAAGACCAGATGTAGGGGATGTATCCTATGAGGATATAGTGATGTCCCTCTCGGTGATAAAGAACACAGATGGGACTTCACGTCAGGGAGAACTGTATAAGTTTAATGAAGATTTAAGTTCTTTGAATGTTTTGTAA
- Protein Sequence
- MVRTYKRKTARSDINEETIQEALLEIIEKNISLRDAAAKYGIKKSTLHYRLKKNRDPLSNPKPVLTSKYASRSVFNKNEEDLLTGCPEKNTSSVLGIPQRAGVEWIKGFMKRNPELSLRKPESTSLSRATSLNKTNVEDFFQNYEKMLKKHNFTASSIYNLDETGVHTVLPPPKIIATRGTKQVGQAVSAERGELVTVMCIINALGGTLPPVFVFPRMRYKHVFLNGAPAGSLGLANQSGWMNSTCFLEAMRHIKLHTRCSKEHPILVLMDNHESHTSLEAILYGRENGIELLSFPPHCSHRMQPLDVALYGPFKSYLRTSFNNWLLSNPGRTITIYNIPELVNTAYTSAFSIKNILSGFKKTGIWPVNRCEYTDEEFQSAYVSDQPTPMSEPISSNAIGNTATDTETESTPHCNNSTEQTICSPATTSLVTIISPQMIRPFPKARPRTGTRGRKKGKSSILTSTPEKDRIMMLRKEKDEKKKRLLEKSMKGRSKYGINDYVLVRFTTKKNVYHYAGQVKGKTGCDYKINFLRKNEGSFFFPIRPDVGDVSYEDIVMSLSVIKNTDGTSRQGELYKFNEDLSSLNVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00179184; iTF_00179171; iTF_00179141; iTF_00179181; iTF_00179183; iTF_00179185; iTF_00179186; iTF_00179187; iTF_00179188; iTF_00179189; iTF_00179190; iTF_00179227;
- 90% Identity
- -
- 80% Identity
- -