Acin016071.2
Basic Information
- Insect
- Athripsodes cinereus
- Gene Symbol
- -
- Assembly
- GCA_947579605.1
- Location
- OX388310.1:17775181-17777135[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-09 6e-07 30.5 0.0 2 39 16 54 15 57 0.89 2 2 8.4 1.7e+03 0.3 0.1 24 36 199 211 199 217 0.84
Sequence Information
- Coding Sequence
- ATGGTTCGCACGTACAAAAGAAAAACAGCAAGGTCTGACATAAATGAAGAAACAATCCAAGAAGCATTATTGGAAATAATAGAAAAAAATATATCTTTGAGAGATGCTGCAGCAAAATATGGGATAAAGAAATCAACACTACACTACAGGCTTAAAAAAACAGGGATCCTTTATCTAATCCGAAACCCTAATGCTATTGGGAACACTGAGACCGAATCTACTCCTCATTGTAATAATAGTACAGAACAAACAATATGCTCACCAGCCACGACCTCTCTGGTAACAATAATATCACCTCAAATGATTAGGCCATTCCCTAAAGCGAGGCCAAGAACGGGCACACGTGGAAGGAAAAAGGGGAAATCATCTATTCTAACATCAACTCCCGAAAAGGACAGAATAATGATGCTTCGAAAAGAAAAAGATGAAAAGAAAAAACGGTTGTTGGAGAAAAGCATGAAAGGTAAAAAGAAATGTATTAAAAAAAAGATACTCATCGAAAGCGATTCAGACAGTAGCATTGAAGTAACGTCAGGTGAATCTGATGATAATTTTTTTACTGAATGCAGTGATGGAGACATATTTTCAGGTAGATCAAAGTATGGAATTAATAATTATGTTCTTGTGAGATTTACGACAAAGAAAAATGTATATCATTATGCTGGTCAAGTCAAGGGAAAAACAGGTTGTGATTACAAAATAAACTTTTTAAGGAAGAATGAAGGTTCATTTTTTTTTCCAATAAGACCAGATGTAGGGGATGTATCCTATGAGGATATAGTGATGTCCCTCTCGGTGATAAAGAACACAGATGGGACTTCACGTCAGGGAGAACTGTATAAGTTTAATGAAGATTTAAGTTCTTTGAATGTTTTGTAA
- Protein Sequence
- MVRTYKRKTARSDINEETIQEALLEIIEKNISLRDAAAKYGIKKSTLHYRLKKTGILYLIRNPNAIGNTETESTPHCNNSTEQTICSPATTSLVTIISPQMIRPFPKARPRTGTRGRKKGKSSILTSTPEKDRIMMLRKEKDEKKKRLLEKSMKGKKKCIKKKILIESDSDSSIEVTSGESDDNFFTECSDGDIFSGRSKYGINNYVLVRFTTKKNVYHYAGQVKGKTGCDYKINFLRKNEGSFFFPIRPDVGDVSYEDIVMSLSVIKNTDGTSRQGELYKFNEDLSSLNVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00179176;
- 90% Identity
- -
- 80% Identity
- -