Amou041125.1
Basic Information
- Insect
- Athrips mouffetella
- Gene Symbol
- -
- Assembly
- GCA_947532105.1
- Location
- OX383979.1:15635206-15664022[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.07 8.3 8.4 0.3 1 23 208 231 208 231 0.96 2 11 0.13 16 7.5 1.3 2 23 239 260 238 260 0.95 3 11 2.7 3.2e+02 3.4 0.2 1 23 264 287 264 287 0.92 4 11 7.1e-06 0.00084 20.9 1.8 1 23 326 348 326 348 0.97 5 11 0.00094 0.11 14.2 0.9 2 22 359 379 359 383 0.92 6 11 0.0063 0.75 11.7 0.8 1 23 423 445 423 445 0.97 7 11 0.043 5.2 9.0 0.5 3 21 455 473 453 478 0.89 8 11 4.6e-05 0.0054 18.4 0.4 1 23 486 509 486 509 0.91 9 11 0.0047 0.56 12.1 3.3 1 23 515 538 515 538 0.96 10 11 6.9e-05 0.0082 17.8 1.0 3 23 547 568 545 568 0.89 11 11 0.21 25 6.9 2.8 1 23 574 597 574 597 0.96
Sequence Information
- Coding Sequence
- ATGGACACTTACAGAAGTCAGATATGCTGTGCGTGTCTTGGTAGCTGTCGAAATATAGTGGTTTTGGATGACGGCTTTAAAAAGCAGTGTTTTTTGCGAACAATTTGTGAAATACCGGCCAGTTCGAGTGTTCCTGTGATAAAACTCTGCATTGAGTGTGATGCCCTTCTTACACGGTTCACGAAGTTTAAACTGCAAGCCCAGAAGTCCTACATGAATCTTACAAATTTTACTTACAAGGGCAAGAATTTAGATTTTCAAATATACAAACAATTCAACATAAACATATTACCCAACGATACTGATGTAGAAGTAGCTTTTAGCGAGCTAGTCAAAATAGAGAAAGATGATATTTTTGAGTCCGATATAAAACAAGAATATAATGATCTCAATGATGCAGAGAATATAGACTACTCAGATGATGATGACAAGGCTTTAATAGAAATAAGTAGAAATAAGAAGTTCGGAAGCAAAAAGAAAGAACACAAAAAGGAGAAAGTCATCGAAAACGGTGAAATAAAAACAGAGCCGGAATATTTCAAAGAGAGAGAGTTGACAGTCCAAGAGGTGGCTGAAGAGAGGAGACAACTGGAGTTGAAAGAGGAGTATGTGAATGCTGTGTTCCGGTGCGAAAGTTGCATAATCTCCTTCCCTAACGGTGACGACCTGAAGGACCATACCCGATTGAAACATGACTTGAATGGTTCAGACTGGAAATGCGAATGGTGTGAATGTACGTTCGGTTCGCAAGTGGCGTACAACTATCACAGTAGTAAACACACTCGGCGCTTCGCTTGTGTCGCTTGTAATGATATGTTTAATAACAAGAGAGGCGCTATCAAGCACTACGAAACGACGCATATGGTCAGACAAGACTTGAGCTATGACTGTCCGCTTAACAATACTATGGAGATGGAGAGCCAATCATTAAAAGAAACAAAAATGAACGAAAATTCAAAAGAAGACGCGCAACAGTTCCCTTGTGAGTTGTGCGATAAGTCCTTCAAATTCCGTACATCCCTCCGTAAGCATGTTGAGAAGCACCGCATAGAGACGGGGCAGAAGCGGCGGCCATATTGCGAAATTTGCAGATTAACCTTCTCCGGAACTTCAAACTTGCAAAAACACGTGAAAAGTAGTTCGAAGCATCAAATTCAACTTAAATTAAGGAAACTAAAAGAAGAATCCAAGTTACCAGACAGCACAGAAAATCAGGGTCCAGATATAGAACAAATCAGGTGTATGGTGAACTCTGGCAGACAGTTGTTCAGTTGTGGTCAGTGTGACCGCAAGTTCCAGTGGCGGGGGAATCTACTGCGACATGAACAGAGCCACAAGGACAGAGCCAATGGGGAGTTAGTATGCGCACCTTGCAATAGATCTTTCTCTTCCATAGCAACCTACAAACAACACATGAAGCTCAGTCGCAAACACGTCTCCGAAAACGACTTCAAGTACATGTGCAGTGAGTGTGGCAAGAAATTCGCGAATAAAACCCGTTTAAAAGACCACGTCGACTGGGAACATTTGAAGAATTACGTCCACAAGTGCGTGGATTGTGCTAAAGTGTTTAAAAGCCACACATCGTTATATCTTCACAAGCAAGTTGTACACAAGAAGGATAATGTATCGCACTTGTGTGATCACTGCGGAAAGCCTTTCGTGAATCGTGCAAAACTTCGCAGCCACATAGTAGCACTCCACTCATCCGACGCGCCGTACGCGTGCTCAGCGTGCAACGCGCGCTTCAGCTGGCATTCGTGCCTCTCGAGACACGTCCGGCGCGTGCACAGGAAAACGGACAAACCCGCGTGA
- Protein Sequence
- MDTYRSQICCACLGSCRNIVVLDDGFKKQCFLRTICEIPASSSVPVIKLCIECDALLTRFTKFKLQAQKSYMNLTNFTYKGKNLDFQIYKQFNINILPNDTDVEVAFSELVKIEKDDIFESDIKQEYNDLNDAENIDYSDDDDKALIEISRNKKFGSKKKEHKKEKVIENGEIKTEPEYFKERELTVQEVAEERRQLELKEEYVNAVFRCESCIISFPNGDDLKDHTRLKHDLNGSDWKCEWCECTFGSQVAYNYHSSKHTRRFACVACNDMFNNKRGAIKHYETTHMVRQDLSYDCPLNNTMEMESQSLKETKMNENSKEDAQQFPCELCDKSFKFRTSLRKHVEKHRIETGQKRRPYCEICRLTFSGTSNLQKHVKSSSKHQIQLKLRKLKEESKLPDSTENQGPDIEQIRCMVNSGRQLFSCGQCDRKFQWRGNLLRHEQSHKDRANGELVCAPCNRSFSSIATYKQHMKLSRKHVSENDFKYMCSECGKKFANKTRLKDHVDWEHLKNYVHKCVDCAKVFKSHTSLYLHKQVVHKKDNVSHLCDHCGKPFVNRAKLRSHIVALHSSDAPYACSACNARFSWHSCLSRHVRRVHRKTDKPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -