Basic Information

Gene Symbol
-
Assembly
GCA_947532105.1
Location
OX383985.1:15635973-15699332[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 3.9 4.6e+02 2.9 0.1 2 23 487 508 486 508 0.90
2 15 0.0077 0.92 11.4 0.0 1 23 519 542 519 542 0.96
3 15 0.58 69 5.5 2.5 1 21 651 671 651 672 0.93
4 15 0.14 16 7.5 2.2 2 20 734 752 733 757 0.87
5 15 0.077 9.2 8.2 0.4 1 23 1533 1555 1533 1555 0.93
6 15 0.035 4.2 9.3 4.5 1 23 1561 1583 1561 1583 0.98
7 15 0.027 3.2 9.7 0.1 1 23 1692 1714 1692 1714 0.97
8 15 5 6e+02 2.5 7.4 1 23 1721 1743 1721 1743 0.95
9 15 0.0027 0.33 12.8 1.8 1 23 1781 1804 1781 1804 0.95
10 15 0.00011 0.013 17.2 1.1 1 23 1811 1834 1811 1834 0.98
11 15 0.0079 0.95 11.3 0.2 2 23 1857 1879 1856 1879 0.96
12 15 9.4e-06 0.0011 20.5 2.2 2 23 1932 1953 1931 1953 0.97
13 15 0.00012 0.014 17.1 2.0 1 23 1959 1981 1959 1981 0.97
14 15 0.00024 0.029 16.1 0.1 1 23 1987 2009 1987 2009 0.97
15 15 0.004 0.47 12.3 0.5 3 23 2017 2038 2015 2038 0.94

Sequence Information

Coding Sequence
ATGTCTGACCCTCCACCGTTGATGCTGTGCATGGAGAAGACAGACGGCCAGGAAGTTGCTGTCCAGATCCAGCCAACTGATGACTTCCACAGCTTCCTTATGAAGGCCCGGTCTCTTCTGGGCTACGATGTGGACATAAACTCAGTAACCCACAACCAACCCGTCTCCTTAACCGACAATATCTACCAGTTCCTTCTGAACTCTGACCTCAACCTGTCGTCCGAGCTCAACAAACCAATAATACCTTCTGCCAACACTGAGGACTTGTATATTCTCGATGATGGCACTCAGATTCGAGCGTCGCAAATACATTTCGATAACGAAGATCCTCCTGTTGATTTAACAGCTGAAAAAATACCCTTCGTCAAGTATAGCGATGCTCCTGATGATGAAGAAAATTATGATGACCATGATATACAAACAGAGAACAAATTATATAATATCGTTGAAAGTCCAGTTAGATTTGCTAAAGACGTTAGCAATAGTTTGATTATACCGTTCAAGTTGGTCAATAACAATCCTTCAGGTTTCGAAGCTCAGTTTTCTAAATACTTAGAAGCTAGTCATCAGGTCAAAACTTATGCCACACTTAATACAGTAACGAATCGAAATAAATCACCAAGAAGTCTTATTCGTGAGAATTTTAAGAATTACGATGAAAGCTTTCAAAGGAAGGCAGATGATTTTACTCACTATACGAGAGAAGATATTCTTAACATGTTCAAAGATGCTCCAGTGCCATCGGCTCCGTATGAGAACCACAGTTTTCCGGAGAAAAGACGGCATGCACGCAAAAGTGATCCGTCAAGGCTTGTCCACAAAAGTTGCCCTAAACCTTTATCTTACGTAGGCCTAGACGGCGTTCTAATAGCAGAATCCGCAAACCAAAACTGTTTCATTTGTACAAAATTCATTGACAAGAATCACGAAAAACTATATGTCTTTGATAACGAAGACCAAAGGTTACATAGATCACTAAAATCTTCACCGCAAAAGAAGACAGCGACACAATTGAAAGTTATATGCGAACAATGCTTGGAAAAGAATTTAAAGCCGTGCCGCAAAAGTCCGAATCAATCTTTGAACCCAGACGAGTATTTAGTCATACGCAACAACCAACAGTACATCTTTCAAAAGAACAACTCATCAAACTATAATTTGAGCAAGAAATTTGCGGATGCGAAAGCAAATCTAAACAAAACTATTCACTACAAAAAAGATGAGAAAGATGAAACTTTAAATGTTGAAATAGGTTCCGATGGGGAGATATTGTCACAATCTATACAGAACGGTCATGAGCCGGTGGTCAAAGAGGAGAAGAAAGATAGTTCGAGCGATGTGGAGATAATTGAGAATGAGCCGGAATTTGATGATATTGATAACTTGGAAGACGCTGACGAAGAAGTAATAGAGTTCCTCGGCAAGTACCAGTGCGATAGTAGCGAAATTAAAGAACTCAAGTGCAGGTTCTGCGAGCAAATCTTCAAGGACCTACCCGAAGTGGTAGACCACGGGGAGGTCCATAAACATGTCATGGATGACAACGAAGTGTTGTTCCCTTGTCCACTGTGCGATTACGGATATGCTAACTTTAAATGGCTGAAAGGGCATCTTAGAGCTGCTCACGATAAGACAACTGAAATTAAGATCGAAGAGAAATCTGAGGATTTGAAAAGCTTAGAGGAAAGGAAAGGGTCGGCCTCGAATGAATCGTCACCGATTGCGCGAAGAACTCGAAGCGCGGCGAAAGTTACTGAAACTATTGTAGCTAAAGAACCTCCTGAAAAACCTGAAGACGACCAAGAAACTACTCAGACTGAGATGAAGTTTGAAATTAAAACGGAGGTGAAGCAAGAAGCCTTGGACAGCAGCGAAGAAGAGATCTGGATAGTGCAGGCAGCTGATGTGGACGAGCAGAATAAGAATGAAAAAGGCGATGAATCCAAAAAGCATCAATGCAACAATTGCAAGCAGTTGTTTCCCTCAGCGGCAACTCTTTCGTCGCACAAGTGTCGCCGTCGCGGACGCAAACCGAAGAACAAGGACGATTGGGTCGTCTGCGTGCCCAGTAAGGAAGACTTTATAAAGAGAGCGCAAGGACGAATCCGAAATGTCGAAGATTCCGGTGAAGATGACTTGTTGACCGTGAGGCCCCGCAAGAAGACCAATAAGGAGCCGTCATCGGACCCCCAGGTGGTCACTTGCCACAACTGCAACGAGTCTTTTACCTCCAAAGTTAGGCTCAAATTTCATATGGTCTCTACCTTCCATCTGGGTGTGGAAGTGGCCAAACTCATCACGTTTAAAGTAAATGCAATTCCACGAGCAGACGAACATGCTGACCCCGTCGGGCGACTACACGTGCCGCGCCTGCGAGCTCGCCACCTTCCGCACCGAGACCGAGCTGTTCGACCACGTGCACTTCCGGCACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTCCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAACGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCATTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTGACACCACAAGCAGCGGCGCTGGCAGTGCCCCGTCGCGGGCTGCGGCAAGACCTTCTACCTCAGGTAACAGTCTGGGAAGACTTTCTACCTCAGGTAACAGTCTGGGAAGACTTTTTGCCTGAGACCGAATTGTTCGAATTATTGGCAACGCTGACAAAACACAGCCGCACTCACACAGATACAAGACGCTATGTGTGCGGCACTTGCGGCAAGAGGTTCCTAGATAAACAGACGTTGGACGAGCACAGCGTCACACATTTGCAGATCAAGCCTTTCCAATGCCACTTCTGCCTGAAACAACTGACTCGTCGGTCCCGACTTCGCATGCACTTGAGAGCCCACGAGGAGGAGATGTGTCTCCGACTGGTGCTGGTCTGTGCCGTCTGCTGTCGCGCCTTCAGGGACCACAATGATGTGCAAGACCACCTGACAAGGTCACCGGAATGTCTAAAGGAGTTCACCAACGAAATAAAAGAAGAGGAAGCTGTCACCGTACAGCTCTCGCCGACCAGCGGACTTGTGAGGCATACTGTACAGATTTCTGAGCCGCGGCGGCTGTCGGCGCCCATCTACCGCGAGGCGGCGGGTCCGGAGGCGGAGGCGCTGCTGGCGACCGTGCCCCCCGCCGCCAGGCCCGTCGTGCGCTGCGTCGAGATCGAGAAGGCCTTCCGCTGCGAGTACTGCGAGGACGTATTCTACTCGGAGGCGGGCCTGAACACGCACCGCGCCATCCACAAGAGTATCAAGAACCCCTTCACCTGCCACATCTGCAAGGTCACCTTCGCCACCTACTCCAGATGCACGACACACAAGACAACCCACGGGTTCTACAAGCGGTCCCTAGCAGTCGCCAAGCAACAACCGGATGTGAGCTCGGCAGCACCTTCCTCCGCCGGGATCCTCGGCTATGGGGACTTCCCGGTCGTCAAGCACTTCTTATGCGAGGACTGCGGCCGCTCCTACCTACACTGGACGTACCTGCAAGTGCACCGGCGGATGAAACACGCGAACGAGAAGTATATGTACAAGTGTCCGCAGTGCGACCTCACCTTCCCCAACAGTTGGAGCCTGTCATATCATCGCAAGAAGCAACACGTTAGACAAGACGCGGACGAGAGCAGTGCCGCCAACAAACAGAAAGAGAGAGAGGATTACAGGATACCATGCAGAGATTGCGACCAAGTGTTACCGAACAAGACGGCCTTATACAAACACAGGAAGAAAGAACACAGCGACATGTCACTGCGGCCCAGCGCTACTGCCAACAAGTCTGAGCCCGCGTGTTCGTCTAACTTCCGGCGTTACCCCCCGCAGCCCCTGTCCCGCCCTGACACCTTCACAATGCACGAACACCTCCAAGCTCAGCACGGCCACGACCTAGACTGGACATGTGAGACCTGCCACAAGTCCTTCACCTCCCGCTCCGAGTTGTCTGTACACGCCCGCACGCACACAGCCCGGCGAACACACTCCTGCGCCGAGTGTGGACATACCTTCAAAACACTCAGCATGCTCAACGAGCACGCCAGAGTGCACAGTGGGGAGAGACCCTTTCCTTGTGACGTGTGCGGAGTCGCCTTCAGGCGGTCGACGGCGATGCGCAACCACCGCCTGATCCACTCCGGAGTGCGCGCGTGGGCCTGTGCGCGCTGCCCCAAGCGGTTCCGCATCCGCTCCGACCTGCGGACACACGCGCGGCTCAAGCACCCCGCCAAGCTGCTCGTCATCGAGGTGGCAGGCCTGAACCCTTCACCTGAGGAAGTGATGGAACGCCTCACGATCAACAATATTCCGCACGATAAAGTCATCGAGATCACTAAGATGACATTCCCTAAGAACGTGACAAGTATAATCCCGAACTGTCCGCGAGCGCTCGAGATGTTGTCCCACGTCCCTCGCACTCAAGTAGCGTGCAGTCGCTCGAGACCGGACAAACCTTTCGAGCTGTACCAGCCGGCGCGGCGCGGGCGCGGCATCGCCAAGAACCCGCGCCGCCCCAAGATCCTGCAGCGCGGGGAGGGCAACGCACACTGCGCCCACAGCGTCCCCGCCCCTCCCGAGCCCCGCCTCACATACTCGCTTCACATACCGTGCGCGCCGCAGAAGGAGGCGGGCACGTCACTCGCGCCGCCGCAAGCTGCCTCTACCTTCCCCATCACGCTCAATGTCAACACCGAGGACTTAACGGAGCTAAACGTCCAACAGCTACTGAGGGAAGGAGTCCTGGTAAATGGGAACCAAATGGTGCAACTACAACTTGATGACAATATGTTGTTGGAATAA
Protein Sequence
MSDPPPLMLCMEKTDGQEVAVQIQPTDDFHSFLMKARSLLGYDVDINSVTHNQPVSLTDNIYQFLLNSDLNLSSELNKPIIPSANTEDLYILDDGTQIRASQIHFDNEDPPVDLTAEKIPFVKYSDAPDDEENYDDHDIQTENKLYNIVESPVRFAKDVSNSLIIPFKLVNNNPSGFEAQFSKYLEASHQVKTYATLNTVTNRNKSPRSLIRENFKNYDESFQRKADDFTHYTREDILNMFKDAPVPSAPYENHSFPEKRRHARKSDPSRLVHKSCPKPLSYVGLDGVLIAESANQNCFICTKFIDKNHEKLYVFDNEDQRLHRSLKSSPQKKTATQLKVICEQCLEKNLKPCRKSPNQSLNPDEYLVIRNNQQYIFQKNNSSNYNLSKKFADAKANLNKTIHYKKDEKDETLNVEIGSDGEILSQSIQNGHEPVVKEEKKDSSSDVEIIENEPEFDDIDNLEDADEEVIEFLGKYQCDSSEIKELKCRFCEQIFKDLPEVVDHGEVHKHVMDDNEVLFPCPLCDYGYANFKWLKGHLRAAHDKTTEIKIEEKSEDLKSLEERKGSASNESSPIARRTRSAAKVTETIVAKEPPEKPEDDQETTQTEMKFEIKTEVKQEALDSSEEEIWIVQAADVDEQNKNEKGDESKKHQCNNCKQLFPSAATLSSHKCRRRGRKPKNKDDWVVCVPSKEDFIKRAQGRIRNVEDSGEDDLLTVRPRKKTNKEPSSDPQVVTCHNCNESFTSKVRLKFHMVSTFHLGVEVAKLITFKVNAIPRADEHADPVGRLHVPRLRARHLPHRDRAVRPRALPAPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQATALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALALPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTPQAAALAVPRRGLRQDLLPQVTVWEDFLPQVTVWEDFLPETELFELLATLTKHSRTHTDTRRYVCGTCGKRFLDKQTLDEHSVTHLQIKPFQCHFCLKQLTRRSRLRMHLRAHEEEMCLRLVLVCAVCCRAFRDHNDVQDHLTRSPECLKEFTNEIKEEEAVTVQLSPTSGLVRHTVQISEPRRLSAPIYREAAGPEAEALLATVPPAARPVVRCVEIEKAFRCEYCEDVFYSEAGLNTHRAIHKSIKNPFTCHICKVTFATYSRCTTHKTTHGFYKRSLAVAKQQPDVSSAAPSSAGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANEKYMYKCPQCDLTFPNSWSLSYHRKKQHVRQDADESSAANKQKEREDYRIPCRDCDQVLPNKTALYKHRKKEHSDMSLRPSATANKSEPACSSNFRRYPPQPLSRPDTFTMHEHLQAQHGHDLDWTCETCHKSFTSRSELSVHARTHTARRTHSCAECGHTFKTLSMLNEHARVHSGERPFPCDVCGVAFRRSTAMRNHRLIHSGVRAWACARCPKRFRIRSDLRTHARLKHPAKLLVIEVAGLNPSPEEVMERLTINNIPHDKVIEITKMTFPKNVTSIIPNCPRALEMLSHVPRTQVACSRSRPDKPFELYQPARRGRGIAKNPRRPKILQRGEGNAHCAHSVPAPPEPRLTYSLHIPCAPQKEAGTSLAPPQAASTFPITLNVNTEDLTELNVQQLLREGVLVNGNQMVQLQLDDNMLLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-