Amou012899.1
Basic Information
- Insect
- Athrips mouffetella
- Gene Symbol
- -
- Assembly
- GCA_947532105.1
- Location
- OX383985.1:959169-975746[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0079 0.94 11.3 1.5 2 23 276 298 275 298 0.92 2 12 0.017 2 10.3 0.1 1 23 304 326 304 326 0.98 3 12 4.3 5.1e+02 2.7 5.1 1 19 332 350 332 352 0.87 4 12 0.0064 0.76 11.6 0.0 3 20 362 379 361 381 0.94 5 12 0.0076 0.91 11.4 0.1 3 23 423 444 423 444 0.96 6 12 0.00058 0.069 14.9 1.2 2 23 479 500 478 500 0.95 7 12 0.0012 0.14 13.9 1.6 2 23 543 564 542 564 0.97 8 12 0.00014 0.017 16.8 12.0 3 23 574 594 573 594 0.97 9 12 0.00031 0.037 15.8 0.7 1 23 599 621 599 621 0.98 10 12 8.2e-05 0.0097 17.6 2.4 1 23 627 650 627 650 0.97 11 12 1.4e-05 0.0016 20.0 0.9 1 23 659 681 659 681 0.98 12 12 0.00014 0.017 16.8 2.6 1 23 687 710 687 710 0.97
Sequence Information
- Coding Sequence
- ATGTTTTTAGCATTCTCTTCCGAGTCGGCAGTAGTTCTTGCTCCTGTAGAAGTAGTGCCTCACGATTCAACAACTCCAGTTATTAAAACAAGTCACTGTCGATTCTGTGCTCAAGAAAAAAACTTTTCAGAATTACTTGATTTTTCGACTAATGCCGAAACTCTAAATCAATTGATCACGATTTTGAGATTCTTCAAAATAGATTTTGTCGATCTATTCAACTTGAAACTACCGAAAACGCTTTGCCCAACATGTTACAACGAGATAATCAAATGTTACAACTATTTTCTAACTGTAAAAGAGTCTCAAAAGATATTAAAACAACTGTTTAAGGTTGAAGATGGGTCTGACAATGAAGTGATAATCAAAATTGAACCTATGGATTGCTTGGATATTGAAATAAATGATCAAAACATCAAACAAGAAAAGAACACTGAATTTGAAAATAATTCTCCAACATTTGAATTTGAAAGCAGTTCTAATTTCCACCAATCGTATAGCTCACCAGGCCCATCTAATTCTGTGAATGTGCAAAGAGAATTTATTGTTCCAATTGAAAATACACCAGGTTCATCTACTGCAATAAAAAATAAAAAAATCAAGAAAAAAAAATCATTCCCCATGTTAAAATCACAATTGGAATCAACCGACGAAGTACCATGTGAACTACCATGTTTCGTGGATGACACTACTTTTAAAAAAAATACACAACAAGAATTTAACAAAATGATAGAAGAAATGATTAAAAATAATATGAATACGAAGCCTAATTCCAATTTTGCTATGGGAAGATCAGGAGACATATCGTGGACTGGTTACCCCTGGCGTTGCAAACACTGTAAGGTGAAGTTCGAGACTATGGCAGATCTGCGTAATCACAGTATGCAGGCACACAAACGTTGCTTTGCATATGAATGTGCAGATTGTCCGGAAGGATTCAACATGTTTTATCCATTTATGGAACATGTAAGAAGACATAGATATCTGCTAAGGCACTACTGTACCCACTGCAATACACATTTCAACACAGTTGCTGACTGTACAAGGCATGAGCTGGCTTACTGGTCAAGCGGACAGAAGATCTGCAACTGGTGCGGTGAAGTCTATCCCAATGCAGATGCGCTGAATACACACAAGAGCGCATTGTATCAAGTGCGGATGCCTCTGAGAGAAGCGAGGAAAGTGCCCCGCGTCGTGCCGTCGGCAAGTAAAGACAGCGATGAAGGGAACCAACGTCCGAGGACCTGGGAAGAGTACGAGTGGGGTTGTCTGGAGTGTGCGCTGAGCTTCACGTCCGCGGCGGAACTCCGCTCGCACACTCAGTCTGTACACGACAAGTGCTTCGCGATGCGCTGCGCCGACTGCCTCGTCGTCAAGTACGACTACCCGCACTTCACCAAGCATGTGGCGGGGCACCGGCCTTATCTCAGAAAATATTGCCCGTACTGCAACCAACACTTTGAAGACGCAAATGAACTGAAAACACACACCGAAGAACACTTAACTGGCCCCCAAAGGGCTTGCTGTGGCTGCGGACAAATATTCCTAAGCAAAGAGGACGAAATACAACACATGCAACAGTTCGCGCCGAGGCGGTCACACAAATACTTGACCACGGAAGAATTGACCTGCCAAGTGTGCCAAAAGGTCCTATGCAACACAACAGCACTAAGAACGCACATAAAAATTCACGATGAAACGAGAAAAAAAGATAACTGCTGCCATTTGTGCGGGAAACAGTTTTCGACCAAACATAATTTGAAGCACCACATGCAGCGTCATGACGACAAAAAATATGAATGTCAAGTGTGCAGCAGAACTTTTGTTTTGGAACGTTATTTAAAAAATCATGTCTTAACACATATTGAAGAAAAACCATACAATTGCGACCTCTGTTCCAAAGGTTTCATCAAAAAGCATATGCTAAGACGCCATATTAACATCAGGCATAACAATTCAATGATGGTGAGGAAATACAAGTGCAGTCTTTGTCCCAAACGGTTTAGTGCTTCAACCCAATTGAAGAATCATTTGAACGCCCACACCGGTACGACGCCTTATAATTGTCTGAACTGCGAAAAGTCGTTTACAAATTGGGGAAATTGCAACAAACACATGATGAGGATCCATGGTACCACTCTAGCAACCACTAAAATGACGGAACGAGGCAGAATCCCGATTGGCGAGGAGATGCCGGAAATTACCACAGACGTTAAAGAGTGGATGGCGGAGGTCATAAAACCTAAATTAATTAGGAAATAA
- Protein Sequence
- MFLAFSSESAVVLAPVEVVPHDSTTPVIKTSHCRFCAQEKNFSELLDFSTNAETLNQLITILRFFKIDFVDLFNLKLPKTLCPTCYNEIIKCYNYFLTVKESQKILKQLFKVEDGSDNEVIIKIEPMDCLDIEINDQNIKQEKNTEFENNSPTFEFESSSNFHQSYSSPGPSNSVNVQREFIVPIENTPGSSTAIKNKKIKKKKSFPMLKSQLESTDEVPCELPCFVDDTTFKKNTQQEFNKMIEEMIKNNMNTKPNSNFAMGRSGDISWTGYPWRCKHCKVKFETMADLRNHSMQAHKRCFAYECADCPEGFNMFYPFMEHVRRHRYLLRHYCTHCNTHFNTVADCTRHELAYWSSGQKICNWCGEVYPNADALNTHKSALYQVRMPLREARKVPRVVPSASKDSDEGNQRPRTWEEYEWGCLECALSFTSAAELRSHTQSVHDKCFAMRCADCLVVKYDYPHFTKHVAGHRPYLRKYCPYCNQHFEDANELKTHTEEHLTGPQRACCGCGQIFLSKEDEIQHMQQFAPRRSHKYLTTEELTCQVCQKVLCNTTALRTHIKIHDETRKKDNCCHLCGKQFSTKHNLKHHMQRHDDKKYECQVCSRTFVLERYLKNHVLTHIEEKPYNCDLCSKGFIKKHMLRRHINIRHNNSMMVRKYKCSLCPKRFSASTQLKNHLNAHTGTTPYNCLNCEKSFTNWGNCNKHMMRIHGTTLATTKMTERGRIPIGEEMPEITTDVKEWMAEVIKPKLIRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -